View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19582_high_7 (Length: 440)
Name: NF19582_high_7
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 2794714 - 2795127
Alignment:
| Q |
18 |
ataggggaactggtgatggagttggggaaaatgggggtcaatgccggatacttgatttggataaccttgcttttgaacaaggtggtttgtttatgacaaa |
117 |
Q |
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| T |
2794714 |
ataggggaactggtgatggagttggggaaaatgggggtcaacgccggatgcttgatttggataaccttgcttttgaacaaggtggtttgtttatgacaaa |
2794813 |
T |
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| Q |
118 |
gggaaaatgtgatcttcctgatgggtcttacaggcttccgagaaaaggttatcaagaaattcatgtgcctgccttgaaggctaaacccattgatcctaat |
217 |
Q |
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| T |
2794814 |
gggaaaatgtgatcttcctgatgggtcttacaggcttccgagaaaaggttatcaagaaattcatgtgcctgccttgaaggctaaacccattgatcctaat |
2794913 |
T |
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| Q |
218 |
gagaaacttgtgaatattggttatatgccggattgggcacaaccagccttcaaaggaatgatacaattgaatagagtgcagagcaaggtatacgagactg |
317 |
Q |
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| T |
2794914 |
gagaaacttgtgaatattggttatatgccggattgggcacaaccagccttcaaaggaatgatacaattgaatagagtgcagagcaaggtatatgagactg |
2795013 |
T |
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| Q |
318 |
ctctgtttaaatcggataatcttttactttgtgctacaactggtgctggaaaaaccaatgttgctgttcttaccatacttcaagagattgcacggcatag |
417 |
Q |
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| T |
2795014 |
ctctgtttaaatcggataatcttttactttgtgctccaactggtgctggaaaaaccaatgttgctgttcttaccatacttcaagagattgcacggcatag |
2795113 |
T |
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| Q |
418 |
aaatcctgatgatg |
431 |
Q |
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| T |
2795114 |
aaatcctggtgatg |
2795127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 68 - 431
Target Start/End: Original strand, 29262277 - 29262640
Alignment:
| Q |
68 |
cttgatttggataaccttgcttttgaacaaggtggtttgtttatgacaaagggaaaatgtgatcttcctgatgggtcttacaggcttc-cgagaaaaggt |
166 |
Q |
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| T |
29262277 |
cttgatttagataacctcacttttgaacaaggtgggttatttatggcaaagaaaaaatgtgaccttcctgatgggtcttataggcatctcga-aaaaggt |
29262375 |
T |
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| Q |
167 |
tatcaagaaattcatgtgcctgccttgaaggctaaacccattgatcctaatgagaaacttgtgaatattggttatatgccggattgggcacaaccagcct |
266 |
Q |
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| T |
29262376 |
tatgaagagattcatgttccagcattgaaggctaaaccccttgatcctaatgagaagcttttgaagatttccgccatgcctgattgggcacaaccggctt |
29262475 |
T |
|
| Q |
267 |
tcaaaggaatgatacaattgaatagagtgcagagcaaggtatacgagactgctctgtttaaatcggataatcttttactttgtgctacaactggtgctgg |
366 |
Q |
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| T |
29262476 |
tcaaaggaatgacacagttgaatagagttcagagcaaggtttatgaaactgctctcttcaaacctgataatttgttgctttgtgcccctaccggtgctgg |
29262575 |
T |
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| Q |
367 |
aaaaaccaatgttgctgttcttaccatacttcaagagattgcacggcatagaaatcctgatgatg |
431 |
Q |
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|||||| ||||||||||||||||| || |||||| ||||||| |||||||| ||| | ||||||| |
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| T |
29262576 |
aaaaacgaatgttgctgttcttactatccttcaacagattgcgcggcataggaataccgatgatg |
29262640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 29189747 - 29189686
Alignment:
| Q |
242 |
atgccggattgggcacaaccagccttcaaaggaatgatacaattgaatagagtgcagagcaa |
303 |
Q |
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| T |
29189747 |
atgcctgattgggcacaaccagctttcaaaggaatgactcacctgaatagagtgcagagcaa |
29189686 |
T |
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