View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19582_high_9 (Length: 401)
Name: NF19582_high_9
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 34054579 - 34054962
Alignment:
| Q |
1 |
attacataggaagaggcaatgaatctggagcaccactactaccattgagcacaataacatttccatcagaatcagcatccactataacagagtcaccctc |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34054579 |
attacacaggaagaggcaatgaatctggagcaccactactaccattgagcacaataacatttccatcagaatcagcatccactataacagagtcaccctc |
34054678 |
T |
|
| Q |
101 |
tttaatctccctgtcacagagagctcaatcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34054679 |
tttaatctccctgtcacagagagctcaatcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcac |
34054778 |
T |
|
| Q |
201 |
cgaaagctcaatctctcgactttcagtttctctgacacttccttcagcattatacaaactatctacttaacatccagttatgtaagttgcctcaaaataa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34054779 |
cgaaagctcaatctctcgactttcagtttctctgacacttccttcagcattatacaaactatctacttaacatccagttatgtaagttgcctc--gataa |
34054876 |
T |
|
| Q |
301 |
tttcatccagcctattcaagaactctggcctaaagtattgcttcactcctcggtcgccaagcttttgatttggctataactgttgt |
386 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34054877 |
tttcatccagcctattcaagaactctggcctaaagtattgcttcactcctcggtcgccaagcttttgatttggttataactgttgt |
34054962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 129 - 382
Target Start/End: Complemental strand, 47383293 - 47383035
Alignment:
| Q |
129 |
tcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatctc-tcgactttcagt |
227 |
Q |
| |
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|||||||||||||| |||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||| || ||||||||||| | | ||||||| |
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| T |
47383293 |
tcttagaggtctggcaccataactaggattataaccttcgtcgaccactctctccctaaatctctctgtcactgagagctcaatctctttggttttcagt |
47383194 |
T |
|
| Q |
228 |
ttctctgacacttccttcagcattatacaaactatctacttaacatccagttatgtaagttgcctcaa---aataatttcatccagcctattcaagaact |
324 |
Q |
| |
|
|||| |||| ||||||||||||||| | |||||| |||||| ||||||| |||||||||||| || ||| ||||||||||||||||||||||||| |
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| T |
47383193 |
ctctcgaacacctccttcagcattatatcagctatctccttaacctccagttttgtaagttgcctgaaaacaatcatttcatccagcctattcaagaact |
47383094 |
T |
|
| Q |
325 |
ctggcctaaagtattgcttca-ctcctcggtcgccaagcttttgatttggctataactg |
382 |
Q |
| |
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||||||||||||||||||||| |||||||||| |||||||||||||| || |||||||| |
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| T |
47383093 |
ctggcctaaagtattgcttcagctcctcggtcaccaagcttttgattcggttataactg |
47383035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 129 - 386
Target Start/End: Complemental strand, 47818366 - 47818096
Alignment:
| Q |
129 |
tcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatctctc-gactttcagt |
227 |
Q |
| |
|
|||||||||||||| ||||||| |||||| |||||||| ||||| ||||||| |||||||||||||||||| ||||||||||||||| | ||||||| |
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| T |
47818366 |
tcttagaggtctggcaccataattaggattataaccttcatcgaccactctctccctaaatctctctgtcactgaaagctcaatctctttggttttcagt |
47818267 |
T |
|
| Q |
228 |
ttctctgacacttccttcagca-ttatacaaactatctact-------taacatccagttatgtaagttgcctcaaaataat---ttcatccagcctatt |
316 |
Q |
| |
|
|||| |||| ||||| |||| ||||| | |||||| || || | ||||||| |||||||||||| |||| ||| ||||||||||||||| |
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| T |
47818266 |
ctctcgaacacctccttaagcaattatatcagctatctcctaactccttagcctccagttttgtaagttgcctgaaaacaatcatttcatccagcctatt |
47818167 |
T |
|
| Q |
317 |
caagaactctggcctaaagtattgcttca-ctcctcggtcgccaagcttttgatttggctataactgttgt |
386 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || |||||||||||||| || |||||||||||| |
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| T |
47818166 |
caagaactctggcctaaagtattgcttcagctcctcgatcaccaagcttttgattcggttataactgttgt |
47818096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 47383442 - 47383348
Alignment:
| Q |
15 |
ggcaatgaatctggagcaccactactaccattgagcacaataacatttccatcagaatcagcatccactataacagagtcaccctctttaatctc |
109 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47383442 |
ggcaatgaatttggagcaccactactaccattgagcacaatcacatttccatcggaatcagcatccactataacagagtcaccctctttaatctc |
47383348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 47818513 - 47818421
Alignment:
| Q |
15 |
ggcaatgaatctggagcaccactactaccattgagcacaataacatttccatcagaatcagcatccactataacagagtcaccctctttaatctc |
109 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
47818513 |
ggcaatgaatttgcagcaccactactaccattgagcacaatcacatttccatcagaatcagcatccactata--agagtcgccctctttaatctc |
47818421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 45116366 - 45116297
Alignment:
| Q |
40 |
taccattgagcacaataacatttccatcagaatcagcatccactataacagagtcaccctctttaatctc |
109 |
Q |
| |
|
|||||||||| ||||| ||||| || || |||||| |||||||||| || |||||||||||||| ||||| |
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| T |
45116366 |
taccattgagaacaatcacattaccctcggaatcaacatccactattacggagtcaccctctttgatctc |
45116297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 129 - 370
Target Start/End: Complemental strand, 40246007 - 40245761
Alignment:
| Q |
129 |
tcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatctc-tcgactttcagt |
227 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||| || ||||||||||| | | ||||||| |
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| T |
40246007 |
tcttagaggcctggccccataactaggattataaccttcgtcgaccactctctccctaaatctctctgtcactgagagctcaatctctttggttttcagt |
40245908 |
T |
|
| Q |
228 |
ttctctgacacttccttcagcattatacaaactatctacttaacatccagttatgtaagttgcctcaa---aataatttcatccagcctattcaagaact |
324 |
Q |
| |
|
|||| |||| ||||||||||||||| |||||| |||||| ||||||| || |||||||| || ||| |||||||| |||||||||||||||| |
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|
| T |
40245907 |
ctctcgaacacctccttcagcattatatctgctatctccttaacctccagtttagtgagttgcctgaaaacaatcatttcatcaagcctattcaagaact |
40245808 |
T |
|
| Q |
325 |
ctggcctaaagtattgcttca-ctcctcggtcgccaagcttttgatt |
370 |
Q |
| |
|
|||||||||||||||| |||| ||| |||||| ||||||| |||||| |
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|
| T |
40245807 |
ctggcctaaagtattgtttcagctcttcggtcaccaagctcttgatt |
40245761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 40246156 - 40246059
Alignment:
| Q |
15 |
ggcaatgaatctggagcaccactactaccattgagcacaataacatttccatcagaatcagcatccactataacagagtcaccctctttaatctccct |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40246156 |
ggcaatgaatctggagcaccagtactaccgttgagtacaatcacgtttccatcagaatcagcatccactataacagagtcgccctctttaatctccct |
40246059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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