View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19582_low_1 (Length: 597)
Name: NF19582_low_1
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 20 - 580
Target Start/End: Complemental strand, 33391403 - 33390846
Alignment:
| Q |
20 |
aggcgaggagttatggcgttattgtcaatagcttctatgagcttgatggtgtttatgctgattattatagagagattcttggnnnnnnngaatggcatat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
33391403 |
aggcgaggagttatggcgttattgtcaatagcttctatgagcttgatggtgtttatgctgattattatagagaggttcttggaaaaaaagaatggcatat |
33391304 |
T |
|
| Q |
120 |
aggtccattctcagtttacaacagagatatggatacatcatactgcataaaagaaccctctatcaataaacatgagtgtctaaagtggcttgacacaaaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33391303 |
aggtccattctcagtttacaacagagatatggatacatcatactgcagaaaagaaccctctatcaataaacatgagtgtctaaagtggcttgacacaaaa |
33391204 |
T |
|
| Q |
220 |
gatatcaactcatcaattgtttatgtgtgctttggaagtaaaaatcactttcttaactctcagcttaaagaaattgctatgggactcgaagcatcgggga |
319 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33391203 |
gatatcaactca---attgtttatgtgtgctttggaagtaaaaatcacttccttaactctcagcttaaagaaattgctatgggactcgaagcatcgggga |
33391107 |
T |
|
| Q |
320 |
aagattttgtttgggtggtgaagaaaaatgcagaagatagagaaattaaaggtcttctagaatttgagaaaagaatgaaaggaaagggactaattataag |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33391106 |
aagattttgtttgggtggtgaagaaaaatgcagaagatagagaaattaaaggtcttctagaatttgagaaaagaatgaaaggaaagggactaattataag |
33391007 |
T |
|
| Q |
420 |
aggttggtctcctcaacttttgattcttcaacataaagctattggagcaattgtgactcattgtggatggaacttaactttggaatgtgtagctgctgga |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33391006 |
aggttggtctcctcaacttttgattcttcaacataaagctattggagcaattgtgactcattgtggatggaacttaactttggaaagtgtagctgctgga |
33390907 |
T |
|
| Q |
520 |
gtacctatgattacttggcctatagctcctgagcaattttataatgagaagttggtaactg |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33390906 |
gtacctatgattacttggcctatagctcctgagcaattttataatgagaagttggtaactg |
33390846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 274 - 575
Target Start/End: Original strand, 33382902 - 33383203
Alignment:
| Q |
274 |
aactctcagcttaaagaaattgctatgggactcgaagcatcggggaaagattttgtttgggtggtgaagaaaaatgcagaagatagagaa-attaaaggt |
372 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||| ||| || |||| |||||||||||| || || ||||||| ||||| ||| | |
|
|
| T |
33382902 |
aactctcagcttaaagaaattgctacgggacttgaagcatccgggcaattttttatttgggtggtgaggagaagcaaagaagatggagaagatt----gg |
33382997 |
T |
|
| Q |
373 |
cttctagaa---tttgagaaaagaatgaaaggaaagggactaattataagaggttggtctcctcaacttttgattcttcaacataaagctattggagcaa |
469 |
Q |
| |
|
|| | |||| ||||||||||||||| ||||||||||||||||||||||||||||||| || ||| ||||||||| |||| |||| ||||||||| |
|
|
| T |
33382998 |
ctaccagaaggatttgagaaaagaatggaaggaaagggactaattataagaggttggtcgccgcaaacgttgattcttgaacacgaagcaattggagcat |
33383097 |
T |
|
| Q |
470 |
ttgtgactcattgtggatggaacttaactttggaatgtgtagctgctggagtacctatgattacttggcctatagctcctgagcaattttataatgagaa |
569 |
Q |
| |
|
|||||||||||||||||||||| | | ||| ||| |||| | |||||| |||||||| ||||||||||| | ||| |||| |||||||| |||||||| |
|
|
| T |
33383098 |
ttgtgactcattgtggatggaattcagttttagaaggtgtggttgctggggtacctatcgttacttggcctgttgctgctgaacaattttacaatgagaa |
33383197 |
T |
|
| Q |
570 |
gttggt |
575 |
Q |
| |
|
|||||| |
|
|
| T |
33383198 |
gttggt |
33383203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 528
Target Start/End: Complemental strand, 33401878 - 33401768
Alignment:
| Q |
418 |
agaggttggtctcctcaacttttgattcttcaacataaagctattggagcaattgtgactcattgtggatggaacttaactttggaatgtgtagctgctg |
517 |
Q |
| |
|
||||||||| ||||||| ||||||||| | | ||| | ||| |||||| || ||||||||||||||||||||| |||||| ||| |||| ||||| |
|
|
| T |
33401878 |
agaggttgggctcctcagcttttgattttggagcatgaggctgttggagggtttatgactcattgtggatggaactcaactttagaaggtgtgtgtgctg |
33401779 |
T |
|
| Q |
518 |
gagtacctatg |
528 |
Q |
| |
|
||||||||||| |
|
|
| T |
33401778 |
gagtacctatg |
33401768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 24 - 580
Target Start/End: Original strand, 18989105 - 18989655
Alignment:
| Q |
24 |
gaggagttatggcgttattgtcaatagcttctatgagcttgatggtgtttatgctgattattatagagagattcttggnnnnnnngaatggcatataggt |
123 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || |||| ||||||||||||||| |
|
|
| T |
18989105 |
gaggagttatggcgttattatcaatagcttctatgagcttgacggtgtttatgctgattattatagagagtttattggaaaaaaagaatggcatataggt |
18989204 |
T |
|
| Q |
124 |
ccattctcagtttacaacagagatatggatacatcatactgcataaaagaaccctctatcaataaacatgagtgtctaaagtggcttgacacaaaagata |
223 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
18989205 |
ctattctcagtttacaacagagatatggatacatcataccgcggaaaagaaccctctatcaataaacacaagtgtctaaagtggcttgacacaaaagata |
18989304 |
T |
|
| Q |
224 |
tcaactcatcaattgtttatgtgtgctttggaagtaaaaatcactttcttaactctcagcttaaagaaattgctatgggactcgaagcatcggggaaaga |
323 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
18989305 |
tcaacttag---ttgtttatgtgtgctttggaagtacaaatcacttccttaactctcagcttaaagaaatttctatgggactcaaagcatcgtggaaaga |
18989401 |
T |
|
| Q |
324 |
ttttgtttgggtggtgaagaaaaatgcagaagatagagaaattaaaggtcttctagaatttgagaaaagaatgaaaggaaagggactaattataagaggt |
423 |
Q |
| |
|
||| |||| ||||||||||||||| |||||||||||||| ||||||| | |||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
18989402 |
tttagttttggtggtgaagaaaaagagagaagatagagaaa---aaggtctaccagaatttgagaaaataatgaaaggaaaaggactaattataagaggt |
18989498 |
T |
|
| Q |
424 |
tggtctcctcaacttttgattcttcaacataaagctattggagcaattgtgactcattgtggatggaacttaactttggaatgtgtagctgctggagtac |
523 |
Q |
| |
|
||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
18989499 |
tggcctcttcaacttttgatttttcaacataaagctattggagcatttgtgactcattgtggatggaacttaactttggaaagtgtggctgctggagtac |
18989598 |
T |
|
| Q |
524 |
ctatgattacttggcctatagctcctgagcaattttataatgagaagttggtaactg |
580 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
18989599 |
ctatgattacttggcctatagcttttgaggaattttataatgagaagttggtaactg |
18989655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 24 - 455
Target Start/End: Original strand, 19001539 - 19001964
Alignment:
| Q |
24 |
gaggagttatggcgttattgtcaatagcttctatgagcttgatggtgtttatgctgattattatagagagattcttggnnnnnnngaatggcatataggt |
123 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
19001539 |
gaggagttatggcattattgtcaatagcttctatgagcttgacggtgcttatgctgattattatagagaggttcttggacaaaatgaatgggatataggt |
19001638 |
T |
|
| Q |
124 |
ccattctcagtttacaacagagatatggatacatcatactgcataaaagaaccctctatcaataaacatgagtgtctaaagtggcttgacacaaaagata |
223 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19001639 |
ccattctcagttttcaacagagatatggatacatcataccgcggaaaagaaccctctatcaataaacatgagtgtctaaagtggcttgacac--aagata |
19001736 |
T |
|
| Q |
224 |
tcaactcatcaattgtttatgtgtgctttggaagtaaaaatcactttcttaactctcagcttaaagaaattgctatgggactcgaagcatcggggaaaga |
323 |
Q |
| |
|
||||| ||| |||||||||||| ||||||||||| ||||||||| |||||||||||| |||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
19001737 |
tcaac---tcagttgtttatgtgttctttggaagtacaaatcacttccttaactctcagattaaagaaattgatatgggactcaaagcatcggggaaaga |
19001833 |
T |
|
| Q |
324 |
ttttgtttgggtggtgaagaaaaatgcagaagatagagaaattaaaggtcttctagaatttgagaaaagaatgaaaggaaagggactaattataagaggt |
423 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||| | ||||| || | ||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
19001834 |
ttttgtttgggtggtgaagaaaaagagagaagatatagaga-aaaaggactaccagaatttgagaaaaggatgaaaggaaacggactaattataagaggt |
19001932 |
T |
|
| Q |
424 |
tggtctcctcaacttttgattcttcaacataa |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
19001933 |
tggtctcctcaacttttgattcttcaacataa |
19001964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 24 - 580
Target Start/End: Complemental strand, 27689175 - 27688613
Alignment:
| Q |
24 |
gaggagttatggcgttattgtcaatagcttctatgagcttgatggtgtttatgctgattattatagagagattcttggnnnnnnngaatggcatataggt |
123 |
Q |
| |
|
||||||||| || |||||||| ||||||||||||||||| || ||||||||| ||||||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
27689175 |
gaggagttacggagttattgttaatagcttctatgagctcgagaatgtttatgcagattattatagagaggtacttggaataaaagaatggcatataggt |
27689076 |
T |
|
| Q |
124 |
ccattctcagtttacaacagagatatgga--------tac-atcatactgcataaaagaaccctctatcaataaacatgagtgtctaaagtggcttgaca |
214 |
Q |
| |
|
||||||||| || |||| ||| ||| ||| ||| ||| ||| | ||||||| | ||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
27689075 |
ccattctcaattcacaatagaaataaggaggaagaaataccatcgtaccgaggaaaagaagcatctattgacaaacacgagtgtctaaagtggcttgaca |
27688976 |
T |
|
| Q |
215 |
caaaagatatcaactcatcaattgtttatgtgtgctttggaagtaaaaatcactttcttaactctcagcttaaagaaattgctatgggactcgaagcatc |
314 |
Q |
| |
|
||||| ||||||||||| ||||||| |||| |||||||||| | ||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27688975 |
caaaaaatatcaactcag---ttgtttacatgtgttttggaagtatgacacacttccttaactctcagcttaaggaaattgctatgggactcgaagcatc |
27688879 |
T |
|
| Q |
315 |
ggggaaagattttgtttgggtggtgaagaaaaatgcagaagatagagaaattaaagg--tcttctagaatttgagaaaagaatgaaaggaaagggactaa |
412 |
Q |
| |
|
||| | ||||| ||||||| |||| || | | |||||||| ||| || || || | | || ||| ||| |||||| | ||||||| ||||||| |
|
|
| T |
27688878 |
agggcataattttatttgggttgtgaggacacagacagaagatggag--atgaatggctacctgaaggattcgaggaaagaacggaaggaaaaggactaa |
27688781 |
T |
|
| Q |
413 |
ttataagaggttggtctcctcaacttttgattcttcaacataaagctattggagcaattgtgactcattgtggatggaacttaactttggaatgtgtagc |
512 |
Q |
| |
|
||||||||||||||||||| ||| | |||||||| ||||| |||| || || ||| ||||||| ||||| |||||||| | ||| ||| | || | |
|
|
| T |
27688780 |
ttataagaggttggtctccacaagtgatgattcttgaacatgaagcaatcggggcatttgtgacgcattgcggatggaattcggttttagaaggagtggt |
27688681 |
T |
|
| Q |
513 |
tgctggagtacctatgattacttggcctatagctcctgagcaattttataatgagaagttggtaactg |
580 |
Q |
| |
|
||||||||||||||||||||||||||| | || | ||||||||||| |||||||||||||| |||| |
|
|
| T |
27688680 |
agctggagtacctatgattacttggcctgtggcggccgagcaattttacaatgagaagttggtcactg |
27688613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 490
Target Start/End: Complemental strand, 14710151 - 14710100
Alignment:
| Q |
439 |
ttgattcttcaacataaagctattggagcaattgtgactcattgtggatgga |
490 |
Q |
| |
|
||||| ||| || ||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
14710151 |
ttgatacttgaaaataaagctattggaggaattgtgactcattgtggttgga |
14710100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 490
Target Start/End: Original strand, 17620164 - 17620215
Alignment:
| Q |
439 |
ttgattcttcaacataaagctattggagcaattgtgactcattgtggatgga |
490 |
Q |
| |
|
||||| ||| || ||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
17620164 |
ttgatacttgaaaataaagctattggaggaattgtgactcattgtggttgga |
17620215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 12613691 - 12613729
Alignment:
| Q |
454 |
aaagctattggagcaattgtgactcattgtggatggaac |
492 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
12613691 |
aaagctattggaggaattgtgactcattgtggttggaac |
12613729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University