View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19582_low_10 (Length: 377)
Name: NF19582_low_10
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 364
Target Start/End: Complemental strand, 4030723 - 4030373
Alignment:
| Q |
14 |
atatatcagaagaaaatattgaactcaagagacgttaacataatctgctataacccttccactattaattgtgtgtgtaccaaagttttgaggcaaaacc |
113 |
Q |
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| T |
4030723 |
atatatcaggagaaaatattgaactcaagagacgttaacataatctgctataacccttccactattaattgtgtgtgtaccaaagttttgaggcaaaacc |
4030624 |
T |
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| Q |
114 |
aattttacttaaaataacttaatcatttctagttgcagttacaatttttgcttttcttttaaggaagtaacatcgtttcccttacatcattcatcacgat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4030623 |
aattttacttaaaataacttaatcatttctagttgcagttacaatttttgcttttcttttaaggaagtaacatcgtttcccttacatcattcatcacgat |
4030524 |
T |
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| Q |
214 |
tactacttccttaaaaaagacaaagttgtgttgtccttcatgattttgcttgataaaaaacataatgtaagcagttggtggtaacgagtaaactaatttg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4030523 |
tactacttccttaaaaaagacaaagttgtgttgtccttcatgattttgcttgataaaaaacataatgtaagcagttggtggtaacgagtaaactaatttg |
4030424 |
T |
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| Q |
314 |
aataaaaatttgaaaaatgtgcattagtttgataagttgatcgagtttttg |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4030423 |
aataaaaatttgaaaaatgtgcattagtttgataagttgatcgagtttttg |
4030373 |
T |
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