View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19582_low_12 (Length: 371)
Name: NF19582_low_12
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_low_12 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: scaffold0188 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 22 - 358
Target Start/End: Original strand, 8339 - 8688
Alignment:
| Q |
22 |
cctggttataatgctcctcaacaggtattttt-ctatttatccaattttgaattgattcatggaagaaaggatatatgtttttaaatcacggcgtgacgn |
120 |
Q |
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| T |
8339 |
cctggttataatgctcctcaacaggtattttttctatttatccaattttgaattgattcatggaagaagggatatatgtttttaaatcacggcgtgtcgt |
8438 |
T |
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| Q |
121 |
nnnnnnnnnnnnngtattatagaaaaattgcagttaaaatgcaggtttaattgtcgttgcat------------gcaatctgcgaaattatagagaattg |
208 |
Q |
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| T |
8439 |
tttttgtttttttgtattatagaaaaattgcagttaaaatgcaggtttaattgtcgttgcattgatattgcgttgcaatctacgaaattatagagaattt |
8538 |
T |
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| Q |
209 |
cgatgcaaatacactcgtggtttgcattgatactgcgttaccatttctgatattacggagaattgtaataaaaatatagggttaaacgtagttgaactgt |
308 |
Q |
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| T |
8539 |
cgatgaaaatacactcgtggtttgcattgatactgcgttatgatttttgatattaaggagaattgtaataaaaatatagggttaaacgtagttgaactgt |
8638 |
T |
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| Q |
309 |
gattcttgatgttataaagaatggcagtaaatatacaatagggttaatct |
358 |
Q |
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| T |
8639 |
gattcttgatgttataaagaatggcagtaaatatacaatagggttaatct |
8688 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 13636663 - 13636701
Alignment:
| Q |
18 |
tcctcctggttataatgctcctcaacaggtatttttcta |
56 |
Q |
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| T |
13636663 |
tccttctggttataatgctccccaacaggtatttttcta |
13636701 |
T |
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