View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19582_low_14 (Length: 335)
Name: NF19582_low_14
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 38174684 - 38174990
Alignment:
| Q |
11 |
ttattcttcagattgaagtttccagaaccgtttgatttctgtttaatcacagatccatacacggaaaatcaggcaaacacgaaaaagtagtctaacccag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38174684 |
ttattcttcagattgaagtttccagaaccgtttgatttctgtttaatcacagatccatacacggaaaatcaggcaaacacgaaaaagtagtctaacccag |
38174783 |
T |
|
| Q |
111 |
agttaagaatattgtagaatacagcttttatttccatcgaagggagnnnnnnnnnncaatatgtcctaaatagatttgtcgactctctgatatttatcac |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
38174784 |
agttaagaatattgtagaatacagcttttatttccatcgaagggaaaaagaaaaaaaaaaatgtcctaaatagatttgtcgactctctgatatttatcac |
38174883 |
T |
|
| Q |
211 |
ttgttgtttaattctgacacatcatatttttattgttactctatcaaaatcaattcttatgcttgcaataatatggctaaaatcatgaaaaatagatcaa |
310 |
Q |
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| T |
38174884 |
tggttgtttaattctgacacatcatatttttattgttactctatcaaaatcaattcttatgcttgcaataatatggctaaaatcatgaaaaatagatcaa |
38174983 |
T |
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| Q |
311 |
tacaaaa |
317 |
Q |
| |
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||||||| |
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| T |
38174984 |
tacaaaa |
38174990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 38201908 - 38202214
Alignment:
| Q |
11 |
ttattcttcagattgaagtttccagaaccgtttgatttctgtttaatcacagatccatacacggaaaatcaggcaaacacgaaaaagtagtctaacccag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38201908 |
ttattcttcagattgaagtttccagaaccgtttgatttctgtttaatcacagatccatacacggaaaatcaggcaaacacgaaaaagtagtctaacccag |
38202007 |
T |
|
| Q |
111 |
agttaagaatattgtagaatacagcttttatttccatcgaagggagnnnnnnnnnncaatatgtcctaaatagatttgtcgactctctgatatttatcac |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
38202008 |
agttaagaatattgtagaatacagcttttatttccatcgaagggaaaaagaaaaaaaaaaatgtcctaaatagatttgtcgactctctgatatttatcac |
38202107 |
T |
|
| Q |
211 |
ttgttgtttaattctgacacatcatatttttattgttactctatcaaaatcaattcttatgcttgcaataatatggctaaaatcatgaaaaatagatcaa |
310 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38202108 |
tggttgtttaattctgacacatcatatttttattgttactctatcaaaatcaattcttatgcttgcaataatatggctaaaatcatgaaaaatagatcaa |
38202207 |
T |
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| Q |
311 |
tacaaaa |
317 |
Q |
| |
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||||||| |
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| T |
38202208 |
tacaaaa |
38202214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 317
Target Start/End: Complemental strand, 38165229 - 38164928
Alignment:
| Q |
11 |
ttattcttcagattgaagtttccagaaccgtttgatttctgtttaatcacagatccatacacggaaaatcaggcaaacacgaaaaagtagtctaacccag |
110 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
38165229 |
ttattcttcggattgaagtttccagaaccgtttgatttctgtttagtcacagatccatacacggaaaatcaggcaaacacgaaaaaatagtcaaacccag |
38165130 |
T |
|
| Q |
111 |
agttaagaatattgtagaatacagcttttatttccatcgaagggagnnnnnnnnnncaatatgtcctaaatagatttgtcgactctctgatatttatcac |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| | |||||| |||| |
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| T |
38165129 |
agttaagaatattgtagaatacagcttttatttccatcgaaggga----aaaaaaacaatatgtcctaaacagatttgtcggctcac-catatttttcac |
38165035 |
T |
|
| Q |
211 |
ttgttgtttaattctgacacatcatatttttattgttactctatcaaaatcaattcttatgcttgcaataatatggctaaaatcatgaaaaatagatcaa |
310 |
Q |
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| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38165034 |
tcgttgtttaattctgacacatcatattttaattattactctatcaaaatcaattcttatgcttgcaataatatggctaaaatcatgaaaaatagatcaa |
38164935 |
T |
|
| Q |
311 |
tacaaaa |
317 |
Q |
| |
|
||||||| |
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|
| T |
38164934 |
tacaaaa |
38164928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 38240923 - 38241062
Alignment:
| Q |
11 |
ttattcttcagattgaagtttccagaaccgtttgatttctgtttaatcacagatccatacacggaaaatcaggcaaacacgaaaaagtagtctaacccag |
110 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| |||||| |||||| ||||| || |||| |
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| T |
38240923 |
ttattcatcggattgaagtttccagaaccgtttgacttctgtttattcgcagatccatacacggaaaatcagacaaacaagaaaaaatagtcaaatccag |
38241022 |
T |
|
| Q |
111 |
agttaagaatattgtagaatacagcttttatttccatcgaagg |
153 |
Q |
| |
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|||| |||||||| |||| || ||||||||||||||||||| |
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| T |
38241023 |
agtt---aatattgtcgaatgcaacttttatttccatcgaagg |
38241062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 11589042 - 11588958
Alignment:
| Q |
67 |
atacacggaaaatcaggcaaacacgaaaaagtagtctaacccagagttaagaatattgtagaatacagcttttatttccatcgaagg |
153 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
11589042 |
atacacagaaaatcaggcaaacacgaaaaactagtc-aacccagagttacaaatattgtagaataca-attttatttccatcgaagg |
11588958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 317
Target Start/End: Original strand, 38241174 - 38241228
Alignment:
| Q |
263 |
attcttatgcttgcaataatatggctaaaatcatgaaaaatagatcaatacaaaa |
317 |
Q |
| |
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|||||||||||||||||| |||||||||||||| ||||| |||| |||||||||| |
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| T |
38241174 |
attcttatgcttgcaatattatggctaaaatcacgaaaagtagaacaatacaaaa |
38241228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 38241260 - 38241308
Alignment:
| Q |
269 |
atgcttgcaataatatggctaaaatcatgaaaaatagatcaatacaaaa |
317 |
Q |
| |
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|||||||||||| |||||||||||||| |||||||||| |||||||||| |
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| T |
38241260 |
atgcttgcaatattatggctaaaatcacgaaaaatagaacaatacaaaa |
38241308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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