View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19582_low_19 (Length: 320)

Name: NF19582_low_19
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19582_low_19
NF19582_low_19
[»] chr6 (3 HSPs)
chr6 (13-302)||(16783716-16784005)
chr6 (53-126)||(16571896-16571969)
chr6 (175-223)||(16571812-16571860)
[»] chr2 (2 HSPs)
chr2 (32-221)||(21628161-21628349)
chr2 (13-139)||(32791968-32792093)
[»] scaffold0256 (2 HSPs)
scaffold0256 (53-126)||(11794-11867)
scaffold0256 (175-223)||(11903-11951)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 16783716 - 16784005
Alignment:
Q  13 aaaatacagaacattgacaaaatgccaagaattgtaatccatttcaaatgtaattaattcaacagcaaagataacagagcaatatgcaggcaataatcaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16783716 aaaatacagaacattgacaaaatgccaagaattgtaatccatttcaaatgtaattaattcaacagcaaagataacagagcaatatgcaggcaataatcaa 16783815  T
Q  113 atcaaatttctgtttaacggagccaagttgagcattttgtttgaacttcaaaactgatcagccctaaactgcaattaagatcaacattgattttaaatcc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16783816 atcaaatttctgtttaacggagccaagttgagcattttgtttgaacttcaaaactgatcagccctaaactgcaattaagatcaacattgattttaaatcc 16783915  T
Q  213 tttcaatgaaactattataattatattactgaacgtcacatatcacacgcacatatatgcactttacctcgataacaacgccatgcaact 302  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16783916 tttcaatgaaactattataattatattactgaatgtcacatatcacacgcacatatatgcactttacctcgataacaacgccatgcaact 16784005  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 16571969 - 16571896
Alignment:
Q  53 atttcaaatgtaattaattcaacagcaaagataacagagcaatatgcaggcaataatcaaatcaaatttctgtt 126  Q
    ||||||||||||||||||||| ||| ||||| ||||  | ||||||||   |||| |||||||| |||||||||    
T  16571969 atttcaaatgtaattaattcagcagaaaagagaacaaggaaatatgcaactaatattcaaatcagatttctgtt 16571896  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 16571860 - 16571812
Alignment:
Q  175 cctaaactgcaattaagatcaacattgattttaaatcctttcaatgaaa 223  Q
    ||||| ||||| || |||||||||||||||||||||| |||| ||||||    
T  16571860 cctaatctgcagttcagatcaacattgattttaaatcatttctatgaaa 16571812  T

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Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 32 - 221
Target Start/End: Complemental strand, 21628349 - 21628161
Alignment:
Q  32 aaatgccaagaattgtaatccatttcaaatgtaattaattcaacagcaaagataacagagcaatatgcaggcaataatcaaatcaaatttctgtttaacg 131  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||| |    
T  21628349 aaatgccaagaattgtaatccatatcaaatgtaattaattcaacagcaaagagaacggagcagt-tgcaggcaataatcaaatcaaatttctgtttaaag 21628251  T
Q  132 gagccaagttgagcattttgtttgaacttcaaaactgatcagccctaaactgcaattaagatcaacattgattttaaatcctttcaatga 221  Q
     ||| |||||||||| ||   |||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  21628250 tagcgaagttgagcaattatattgcccttcaaaactgatcagccctaaactgcaattcagatcaacattgattttaaatcatttctatga 21628161  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 32792093 - 32791968
Alignment:
Q  13 aaaatacagaacattgacaaaatgccaagaattgtaatccatttcaaatgtaattaattcaacagcaaagataacagagcaatatgcaggcaataatcaa 112  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||| ||  ||||| | ||||||||||||||||    
T  32792093 aaaatacataacattgacaaaatgccaagaattgtaatccatatcaagtgtaattaattcaacagtaaagagaatggagcagt-tgcaggcaataatcaa 32791995  T
Q  113 atcaaatttctgtttaacggagccaag 139  Q
    |||||| |||||||||| | |||||||    
T  32791994 atcaaaattctgtttaaagtagccaag 32791968  T

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Target: scaffold0256 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 11794 - 11867
Alignment:
Q  53 atttcaaatgtaattaattcaacagcaaagataacagagcaatatgcaggcaataatcaaatcaaatttctgtt 126  Q
    ||||||||||||||| ||||| ||| ||||| ||||| |||||||||||  |||| ||||||||||||||||||    
T  11794 atttcaaatgtaattgattcagcagaaaagagaacagggcaatatgcagttaatattcaaatcaaatttctgtt 11867  T

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Target: scaffold0256; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 11903 - 11951
Alignment:
Q  175 cctaaactgcaattaagatcaacattgattttaaatcctttcaatgaaa 223  Q
    |||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  11903 cctaaactgcaattcagatcaacattgattttaaatcatttctatgaaa 11951  T

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