View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19582_low_2 (Length: 584)

Name: NF19582_low_2
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19582_low_2
NF19582_low_2
[»] chr6 (4 HSPs)
chr6 (21-520)||(2427971-2428460)
chr6 (101-162)||(24766035-24766096)
chr6 (90-138)||(6453027-6453075)
chr6 (101-161)||(8514124-8514184)
[»] chr2 (4 HSPs)
chr2 (201-416)||(1087345-1087562)
chr2 (89-153)||(18587187-18587251)
chr2 (109-164)||(45226123-45226178)
chr2 (79-162)||(27671294-27671378)
[»] chr3 (2 HSPs)
chr3 (281-402)||(36812637-36812757)
chr3 (101-162)||(44267144-44267205)
[»] chr4 (4 HSPs)
chr4 (201-416)||(48475554-48475774)
chr4 (89-162)||(31052985-31053058)
chr4 (80-148)||(54441185-54441253)
chr4 (78-133)||(31053044-31053100)
[»] chr7 (8 HSPs)
chr7 (81-164)||(18358792-18358876)
chr7 (113-197)||(2383650-2383734)
chr7 (114-162)||(21906728-21906776)
chr7 (78-133)||(23540181-23540237)
chr7 (113-156)||(28229238-28229281)
chr7 (112-163)||(44411171-44411222)
chr7 (96-162)||(21222838-21222904)
chr7 (101-161)||(23540224-23540284)
[»] chr5 (4 HSPs)
chr5 (78-133)||(14717340-14717396)
chr5 (78-162)||(42347654-42347739)
chr5 (113-164)||(32892046-32892097)
chr5 (89-136)||(41018291-41018338)
[»] chr8 (5 HSPs)
chr8 (104-161)||(25502306-25502363)
chr8 (114-162)||(35948725-35948773)
chr8 (80-162)||(10172444-10172527)
chr8 (101-162)||(37639014-37639076)
chr8 (116-164)||(39380188-39380236)
[»] chr1 (2 HSPs)
chr1 (89-138)||(1226039-1226088)
chr1 (78-159)||(22336420-22336502)
[»] scaffold0527 (2 HSPs)
scaffold0527 (102-162)||(2052-2112)
scaffold0527 (102-162)||(10115-10175)


Alignment Details
Target: chr6 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 21 - 520
Target Start/End: Original strand, 2427971 - 2428460
Alignment:
Q  21 gacaaaagcaaataagtcaaatgacgaaataaattaggagggtttccaaattaaagaataattatttt-cacatgcatcttatgatgtgttatcacatca 119  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2427971 gacagaagcaaataagtcaaatgacgaaataaattaggagggtttccaaattaaagaataattattttacacatgcatcttatgatgtgttatcacatca 2428070  T
Q  120 attaatgaatatgacaattaatgtgtttttatattcattaattaaagtctcaacacgtcaatgaatgtatgcataaatgtgtttttatatagtttaattt 219  Q
    ||||||||||||||||||||| ||||||| ||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2428071 attaatgaatatgacaattaa-gtgttttcatattcattaattgaagtcacaacacgtcattgaatgtatgcataaatgtgtttttatatagtttaattt 2428169  T
Q  220 caattaacaaacaaaaataccatcagagatgggaggttggagaagaagtcaatggtagatggagaagtgagattaaacaacaacaaaattactttcctac 319  Q
    |||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2428170 caattaacaaacaaaaataccatca-------caggttggagaagaagtcaatggtagatggagaagtgagattaaacaacaacaaaattacttttctac 2428262  T
Q  320 cctctcaatctaatttaaaataatggtgttttggtccaaagtgaaaacgtgcatgttgctaatgcacacattcgtaaaaaagggtaggtgtgttataata 419  Q
    |||||||||||||||||||||||| ||||||| || |||||| |||| ||||||||||||||||||||| ||||||||||||||| |||||||||||| |    
T  2428263 cctctcaatctaatttaaaataatagtgtttttgttcaaagtaaaaatgtgcatgttgctaatgcacaccttcgtaaaaaagggtgggtgtgttataaca 2428362  T
Q  420 ttattagagtacttacttactctccatttctttaaagataataatattgcaaccccctcttcctcatgttaaaaaatatacacaacacttcttttaaaga 519  Q
    |||||||||||     ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2428363 ttattagagta---tgttactctccatttctataaagataataatattgcaaccccctcttcctcatgttaaaaaatatacacaacacttcttttaaaga 2428459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 24766035 - 24766096
Alignment:
Q  101 atgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 162  Q
    ||||||||||  ||||||||||||||||||||||||   ||||||||| ||||| |||||||    
T  24766035 atgatgtgttgccacatcaattaatgaatatgacaacgcatgtgttttcatatttattaatt 24766096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 6453075 - 6453027
Alignment:
Q  90 acatgcatcttatgatgtgttatcacatcaattaatgaatatgacaatt 138  Q
    |||||||||| |||||||||| |||| ||||||||||||||||| ||||    
T  6453075 acatgcatctaatgatgtgttgtcacgtcaattaatgaatatgataatt 6453027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 8514184 - 8514124
Alignment:
Q  101 atgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaat 161  Q
    ||||||| || |||||||||||||| |||||||||| |  | ||||||||| |||||||||    
T  8514184 atgatgtattgtcacatcaattaataaatatgacaactcttatgtttttatcttcattaat 8514124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 201 - 416
Target Start/End: Original strand, 1087345 - 1087562
Alignment:
Q  201 tttttatatagtttaatttcaattaacaaacaaaaataccatcagagatgggaggttg---gagaagaagtcaatggtagatggagaagtgagattaaac 297  Q
    |||||||||| ||||||||||||| | ||| | ||| | ||||| ||||| || | ||   |||||||||||||||| ||||||||||||||||| ||||    
T  1087345 tttttatataatttaatttcaatttaaaaaaataaaaaacatcacagatgcgatgatgtttgagaagaagtcaatggaagatggagaagtgagataaaac 1087444  T
Q  298 aacaacaaaattactttcctaccctctcaatctaatttaaaataatggtgttttggtccaaagtgaaaacgtgcatgttgctaatgcacacattcgtaaa 397  Q
    ||||||||| ||||||| ||||||||| |||| |||||||| ||||||| || | ||||||||  |||| |||  |||||||||||||||| |||  |||    
T  1087445 aacaacaaagttacttttctaccctctaaatccaatttaaagtaatggttttcttgtccaaag-caaaaagtgtttgttgctaatgcacaccttcacaaa 1087543  T
Q  398 aaagggtaggtgtgttata 416  Q
    ||| ||| | |||||||||    
T  1087544 aaaaggtggatgtgttata 1087562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 18587187 - 18587251
Alignment:
Q  89 cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatat 153  Q
    ||||||||||  || |||||||||||| |||||||||||||||||| ||| || |||||||||||    
T  18587187 cacatgcatccaataatgtgttatcacgtcaattaatgaatatgactattcatttgtttttatat 18587251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 45226123 - 45226178
Alignment:
Q  109 ttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaattaa 164  Q
    |||||||||||| || | ||||||| |||| ||||||||||||||| |||||||||    
T  45226123 ttatcacatcaaatagtaaatatgataattcatgtgtttttatatttattaattaa 45226178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 27671294 - 27671378
Alignment:
Q  79 taattatttt-cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 162  Q
    |||||||||| |||||  |||| || ||||||| |||||| ||||||||||||| | || | ||||| ||| |||||||||||||    
T  27671294 taattattttacacatttatctgataatgtgttgtcacataaattaatgaatataataactcatgtgctttcatattcattaatt 27671378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 281 - 402
Target Start/End: Complemental strand, 36812757 - 36812637
Alignment:
Q  281 gagaagtgagattaaacaacaacaaaattactttcctaccctctcaatctaatttaaaataatggtgttttggtccaaagtgaaaacgtgcatgttgcta 380  Q
    ||||| |||||| |||||||| |||| ||||||||||||||||| |||||||||||||| |||||| |||| |||||||   |||| ||| |||||||||    
T  36812757 gagaaatgagataaaacaacagcaaa-ttactttcctaccctctaaatctaatttaaaacaatggtatttttgtccaaaaccaaaaggtggatgttgcta 36812659  T
Q  381 atgcacacattcgtaaaaaagg 402  Q
    |||||||| ||| |||||||||    
T  36812658 atgcacaccttcataaaaaagg 36812637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 44267205 - 44267144
Alignment:
Q  101 atgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 162  Q
    ||||||| || |||| |||| ||||||| | ||||| |||||||||||||| ||||||||||    
T  44267205 atgatgtattctcacgtcaaataatgaacacgacaactaatgtgtttttatgttcattaatt 44267144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 201 - 416
Target Start/End: Original strand, 48475554 - 48475774
Alignment:
Q  201 tttttatatagtttaatttcaattaacaaacaaaaatac--catcagagatgggaggttg---gagaagaagtcaatggtagatggagaagtgagattaa 295  Q
    |||||||||| ||||||||||||||| ||| ||||| |   ||||| |||||||| | ||   ||||||||||  |||| |||||||||| |||||| ||    
T  48475554 tttttatataatttaatttcaattaaaaaaaaaaaaaaaatcatcacagatgggatgatgtttgagaagaagttgatggaagatggagaaatgagataaa 48475653  T
Q  296 acaacaacaaaattactttcctaccctctcaatctaatttaaaataatggtgttttggtccaaagtgaaaacgtgcatgttgctaatgcacacattcgta 395  Q
    ||||||||||| |||  || ||| ||||| ||||||||||||| ||||||| |||| |||||||   ||||  |   |||||||||| ||||| ||| ||    
T  48475654 acaacaacaaagttatctttctatcctctaaatctaatttaaagtaatggtttttttgtccaaaacaaaaagatatttgttgctaatacacaccttcata 48475753  T
Q  396 aaaaagggtaggtgtgttata 416  Q
    ||||||| ||||||| |||||    
T  48475754 aaaaaggttaggtgtattata 48475774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 31052985 - 31053058
Alignment:
Q  89 cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 162  Q
    ||||||||||  ||| ||||||   ||||| ||||||||||||||||| |  |||||||| |||||||||||||    
T  31052985 cacatgcatccaatgttgtgttgctacatcgattaatgaatatgacaactcgtgtgttttcatattcattaatt 31053058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 54441185 - 54441253
Alignment:
Q  80 aattatttt-cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttt 148  Q
    ||||||||| || |||||||| ||||||||||  |||||||||||||||||| || |||| |||||||||    
T  54441185 aattattttacatatgcatctaatgatgtgttc-cacatcaattaatgaatacgataattcatgtgtttt 54441253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 31053100 - 31053044
Alignment:
Q  78 ataattatttt-cacatgcatcttatgatgtgttatcacatcaattaatgaatatga 133  Q
    ||||||||||| ||||||||||  |||||||||| || | |||||||||||||||||    
T  31053100 ataattattttacacatgcatccaatgatgtgttgtcgcgtcaattaatgaatatga 31053044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 18358792 - 18358876
Alignment:
Q  81 attatttt-cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaattaa 164  Q
    |||||||| ||||||||||  |||||||||| |||  |||||||||||||||||||| | ||||||||| || ||||||||||||    
T  18358792 attattttgcacatgcatcaaatgatgtgttgtcatgtcaattaatgaatatgacaagtcatgtgttttcatgttcattaattaa 18358876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 2383734 - 2383650
Alignment:
Q  113 cacatcaattaatgaatatgacaattaatgtgtttttatattcattaattaaagtctcaacacgtcaatgaatgtatgcataaat 197  Q
    ||||| |||||||| ||||||||||| || | |||||||||| ||||||||| || | ||||| ||| |||||| ||| ||||||    
T  2383734 cacattaattaatggatatgacaatttatttatttttatatttattaattaacgtgtgaacacatcattgaatgaatgtataaat 2383650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 21906728 - 21906776
Alignment:
Q  114 acatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 162  Q
    |||||||||||| |||||||||| | ||||||||| |||||||||||||    
T  21906728 acatcaattaattaatatgacaacttatgtgttttcatattcattaatt 21906776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 23540181 - 23540237
Alignment:
Q  78 ataattatttt-cacatgcatcttatgatgtgttatcacatcaattaatgaatatga 133  Q
    ||||||||||| |||||| |||| ||||||||||||||| || ||||||||||||||    
T  23540181 ataattattttgcacatgtatctaatgatgtgttatcacgtctattaatgaatatga 23540237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 28229281 - 28229238
Alignment:
Q  113 cacatcaattaatgaatatgacaattaatgtgtttttatattca 156  Q
    |||||||||||||| ||||||||||| ||||||||| |||||||    
T  28229281 cacatcaattaatggatatgacaattcatgtgttttcatattca 28229238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 44411222 - 44411171
Alignment:
Q  112 tcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatta 163  Q
    |||||| ||||||||||||  |||| | ||||||||||||||||||||||||    
T  44411222 tcacattaattaatgaatacaacaactcatgtgtttttatattcattaatta 44411171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 21222904 - 21222838
Alignment:
Q  96 atcttatgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 162  Q
    |||| ||||| ||||  |||||||||||||||||||||||| | |  |||||||||||| |||||||    
T  21222904 atctaatgatatgttgacacatcaattaatgaatatgacaacttacatgtttttatatttattaatt 21222838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 23540284 - 23540224
Alignment:
Q  101 atgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaat 161  Q
    |||||| ||| |||||||||||||| |||| ||||||| || | |||| ||||||||||||    
T  23540284 atgatgcgttgtcacatcaattaataaataagacaattcatatattttcatattcattaat 23540224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 14717396 - 14717340
Alignment:
Q  78 ataattatttt-cacatgcatcttatgatgtgttatcacatcaattaatgaatatga 133  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||    
T  14717396 ataattattttacacatgcatctaatgatgtgttgtcacatcaattaatgaatatga 14717340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 42347654 - 42347739
Alignment:
Q  78 ataattatttt-cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 162  Q
    ||||||||||| | ||||||||  ||||||| ||||||||||||| ||||||||| |||| | || |||||| ||| |||||||||    
T  42347654 ataattattttacgcatgcatccaatgatgtattatcacatcaatgaatgaatataacaactcatttgttttcatactcattaatt 42347739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 32892097 - 32892046
Alignment:
Q  113 cacatcaattaatgaatatgacaattaatgtgtttttatattcattaattaa 164  Q
    ||||||||| |||||||| ||||| | ||||||||| |||||||||||||||    
T  32892097 cacatcaatcaatgaatacgacaactcatgtgttttcatattcattaattaa 32892046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 41018338 - 41018291
Alignment:
Q  89 cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaa 136  Q
    ||||||||||| ||||||||||  | ||||||||||||||||||||||    
T  41018338 cacatgcatctaatgatgtgttgccccatcaattaatgaatatgacaa 41018291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 25502306 - 25502363
Alignment:
Q  104 atgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaat 161  Q
    ||||||| |||||||||||||||||||| |||| | ||||||||||||||| ||||||    
T  25502306 atgtgttgtcacatcaattaatgaatataacaacttatgtgtttttatattaattaat 25502363  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 35948773 - 35948725
Alignment:
Q  114 acatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 162  Q
    |||||||||| |||||||||||||| || |||||||||||| |||||||    
T  35948773 acatcaattagtgaatatgacaattcatatgtttttatatttattaatt 35948725  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 10172527 - 10172444
Alignment:
Q  80 aattatttt-cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 162  Q
    ||||||||| ||||||||||  |||||| ||| |||| ||||||| |||||||||||| | || |||||| | |||||||||||    
T  10172527 aattattttacacatgcatcaaatgatgcgttgtcacgtcaattagtgaatatgacaactcatatgttttcacattcattaatt 10172444  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 37639014 - 37639076
Alignment:
Q  101 atgatgtgttatcacatcaattaatgaatatgacaattaatgtg-tttttatattcattaatt 162  Q
    ||||||||||||||||||||||| | ||||||| || | ||||| |||||||||| |||||||    
T  37639014 atgatgtgttatcacatcaattagtaaatatgataacttatgtgttttttatatttattaatt 37639076  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 39380236 - 39380188
Alignment:
Q  116 atcaattaatgaatatgacaattaatgtgtttttatattcattaattaa 164  Q
    |||||| |||||||||||||||| || ||||||| |||| |||||||||    
T  39380236 atcaatgaatgaatatgacaattcatatgtttttttatttattaattaa 39380188  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 1226039 - 1226088
Alignment:
Q  89 cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaatt 138  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||| ||||    
T  1226039 cacatgcatctaatgatgtattatcacatcaattaataaatatgagaatt 1226088  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 22336420 - 22336502
Alignment:
Q  78 ataattatttt-cacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcatta 159  Q
    ||||||||||| ||||||||||  || |||| | || ||||||||||||||||||||||| |  |||||||||| ||| ||||    
T  22336420 ataattattttacacatgcatcaaataatgtatgattacatcaattaatgaatatgacaactcgtgtgtttttaaatttatta 22336502  T

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Target: scaffold0527 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 2112 - 2052
Alignment:
Q  102 tgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 162  Q
    |||||| || |||| ||||||||| ||| |||| | |||||| ||||||||||||||||||    
T  2112 tgatgtattgtcacttcaattaataaatttgaccactaatgtatttttatattcattaatt 2052  T

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Target: scaffold0527; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 10175 - 10115
Alignment:
Q  102 tgatgtgttatcacatcaattaatgaatatgacaattaatgtgtttttatattcattaatt 162  Q
    |||||| || |||| ||||||||| ||| |||| | |||||| ||||||||||||||||||    
T  10175 tgatgtattgtcacttcaattaataaatttgaccactaatgtatttttatattcattaatt 10115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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