View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19582_low_20 (Length: 320)
Name: NF19582_low_20
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 300
Target Start/End: Original strand, 14588554 - 14588840
Alignment:
| Q |
14 |
agcataggtgcagctcgaaccttggttttctttaatccaccaggggaacgaaccgacatagacttgtatagtccaccaaaatgggttcctttccaaacaa |
113 |
Q |
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| T |
14588554 |
agcataggcgcagctcggaacttggttttctttaatccaccaggggaacgaaccgacatagacttgtatagtccaccaaaatgggttcctttccaaacaa |
14588653 |
T |
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| Q |
114 |
ccattcatctcaaacgttacgaggttatgagaatacagtcggctgtgaagaatgattctggaagaaaatttagtcgttctgatgccgacaaactatacgc |
213 |
Q |
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| T |
14588654 |
ccattcatctcaaacgttacgaggttatgagaatacagtcagctgtgaagaatgattatggaagaaaatttagtcgttctgatgccgacaaactatacgc |
14588753 |
T |
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| Q |
214 |
aagtgttgacctttttcttttcagaacctctagagaacttgaaggtgaatggttagattatatttctgaccaatacaaggttcctgt |
300 |
Q |
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| T |
14588754 |
aagtgttgacctttttcttttcagaacctctagagaacttgaaggtgaatggttagattatatttctgaccaatacaaggttcctgt |
14588840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 34 - 300
Target Start/End: Original strand, 14622232 - 14622498
Alignment:
| Q |
34 |
cttggttttctttaatccaccaggggaacgaaccgacatagacttgtatagtccaccaaaatgggttcctttccaaacaaccattcatctcaaacgttac |
133 |
Q |
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| T |
14622232 |
cttgggtttctttaatccaccaggggaacgaaccgacatagacttgtatagtccaccaaaatgggttcctttccaaacaaccattcatctcaaacgttac |
14622331 |
T |
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| Q |
134 |
gaggttatgagaatacagtcggctgtgaagaatgattctggaagaaaatttagtcgttctgatgccgacaaactatacgcaagtgttgacctttttcttt |
233 |
Q |
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| T |
14622332 |
gaggttatgagaatacagtcaactgtgaagaatgattatggaagaaaatttagtcgttctgatgccgacaaactatacgcaagtgttgacctttttcttt |
14622431 |
T |
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| Q |
234 |
tcagaacctctagagaacttgaaggtgaatggttagattatatttctgaccaatacaaggttcctgt |
300 |
Q |
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| T |
14622432 |
tcagaacctctagagaacttgaaggtgaatggttagattatatttctgaccaatacaaggttcctgt |
14622498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 29954317 - 29954417
Alignment:
| Q |
200 |
gacaaactatacgcaagtgttgacctttttcttttcagaacctctagagaacttgaaggtgaatggttagattatatttctgaccaatacaaggttcctg |
299 |
Q |
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|||||| ||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
29954317 |
gacaaagtatactcaagttgtgacctttttcttataagaacctctagagaacttgaaggtgaatggttagattatatttcttaccaatacaaagttcctg |
29954416 |
T |
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| Q |
300 |
t |
300 |
Q |
| |
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| |
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| T |
29954417 |
t |
29954417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 51370123 - 51370036
Alignment:
| Q |
213 |
caagtgttgacctttttcttttcagaacctctagagaacttgaaggtgaatggttagattatatttctgaccaatacaaggttcctgt |
300 |
Q |
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| T |
51370123 |
caagtgctgacatgtttcttattagaacctctagagaacttgaaggtccatggttagattatctttctcaccgatacaaggttcctgt |
51370036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 1361691 - 1361767
Alignment:
| Q |
224 |
ctttttcttttcagaacctctagagaacttgaaggtgaatggttagattatatttctgaccaatacaaggttcctgt |
300 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||| |||||||| ||||| || |||||||||||||| |
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| T |
1361691 |
ctttttcttctcagaacctcaagagaacttgaaggtgaatggttggattatatctctgaacagtacaaggttcctgt |
1361767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 300
Target Start/End: Original strand, 20492472 - 20492552
Alignment:
| Q |
220 |
tgacctttttcttttcagaacctctagagaacttgaaggtgaatggttagattatatttctgaccaatacaaggttcctgt |
300 |
Q |
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| T |
20492472 |
tgaccttattcttatcagagccactagagaacttgaaggtcaatggttagattatatttcggatcgatacaaggttcctgt |
20492552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 302
Target Start/End: Original strand, 1354805 - 1354883
Alignment:
| Q |
224 |
ctttttcttttcagaacctctagagaacttgaaggtgaatggttagattatatttctgaccaatacaaggttcctgttg |
302 |
Q |
| |
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||||| ||| |||||||||| ||||| ||||||||||||||||| |||||||| ||||| || ||||| |||||||||| |
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| T |
1354805 |
cttttacttctcagaacctcgagagagcttgaaggtgaatggttggattatatctctgaacagtacaatgttcctgttg |
1354883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 1361556 - 1361611
Alignment:
| Q |
86 |
ccaccaaaatgggttcctttccaaacaaccattcatctcaaacgttacgaggttat |
141 |
Q |
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| T |
1361556 |
ccaccaaaatgggttccttttcaaacaaccattcatctcaaaccttatgagattat |
1361611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 20492331 - 20492380
Alignment:
| Q |
79 |
gtatagtccaccaaaatgggttcctttccaaacaaccattcatctcaaac |
128 |
Q |
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| T |
20492331 |
gtatagtccaccaaagtgggttcctttcaaaacaaacattcatttcaaac |
20492380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 11531651 - 11531727
Alignment:
| Q |
220 |
tgacctttttcttttcagaacctctagagaacttgaaggtgaatggttagattatatttctgaccaatacaaggttc |
296 |
Q |
| |
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|||| |||||||| |||||| || || |||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
11531651 |
tgacatttttcttatcagaagctgtaaagaacttgaaggtgaatggttagattatatttctagccaatataaggttc |
11531727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 11530122 - 11530203
Alignment:
| Q |
40 |
tttctttaatccaccaggggaacgaaccgacatagacttgtatagtccaccaaaatgggttcctttccaaacaaccattcat |
121 |
Q |
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|||||||||||||||| ||| | || | |||||||| |||||| |||||||| |||||||||||| |||||||||||||| |
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| T |
11530122 |
tttctttaatccaccaaaggatcaaatcaacatagacaggtatagcccaccaaagtgggttcctttcgaaacaaccattcat |
11530203 |
T |
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