View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19582_low_27 (Length: 250)
Name: NF19582_low_27
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_low_27 |
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| [»] chr6 (6 HSPs) |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 16783312 - 16783546
Alignment:
| Q |
16 |
atacacaagaaatgtgactcaatggaaaatatcagattcaaatataattcagcaggaaagataactagaagcaactgaacaatagaagcatccataacaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16783312 |
atacacaagaaatgtgactcaatggaaaatatcagattcaaatataattcagcagcaaagataactagaagcaactgaacaatagaagcatccataacaa |
16783411 |
T |
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| Q |
116 |
agtaagattgttagaagatacaaaaaaggaatctgcaaatttacaattttcatcaaatcaaataatgatttaggaaggatactacagaatgtttctagag |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16783412 |
agtaagattgttagcagatacaaaaaaggaatctgcaaatttacaattttcatcaaatcaaataatgatttaggaaggatactacagaatgtttctagag |
16783511 |
T |
|
| Q |
216 |
aaataaagcattgattaatccattatacgatcaca |
250 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
16783512 |
aaataaagcattgattaatccattatacgatcaca |
16783546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 16572162 - 16572044
Alignment:
| Q |
120 |
agattgttagaagatacaaaaaaggaatctgcaaatttacaattttcatcaaatcaaataatg-atttaggaaggatactacagaatgtttctagagaaa |
218 |
Q |
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||||| ||||||||| ||||||| ||||||| |||||||||||||||| |||| || ||| | ||||||||||| |||||||||||||||||| ||||| |
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| T |
16572162 |
agattattagaagatgcaaaaaatgaatctgtaaatttacaattttcaacaaagcatgtaaaggatttaggaagggtactacagaatgtttctaaagaaa |
16572063 |
T |
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| Q |
219 |
taaagcattgattaatcca |
237 |
Q |
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| T |
16572062 |
ttaagcattgattaatcca |
16572044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 16873984 - 16873867
Alignment:
| Q |
120 |
agattgttagaagatacaaaaaaggaatctgcaaatttacaattttcatcaaatcaaataatg-atttaggaaggatactacagaatgtttctagagaaa |
218 |
Q |
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||||||||||| ||| ||||||| ||||||| |||||||||||||||| |||| || |||| | ||||||||||| |||||||||||||||||| ||||| |
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| T |
16873984 |
agattgttagatgatgcaaaaaatgaatctgtaaatttacaattttca-caaagcatataaaggatttaggaagggtactacagaatgtttctaaagaaa |
16873886 |
T |
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| Q |
219 |
taaagcattgattaatcca |
237 |
Q |
| |
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| T |
16873885 |
ttaagcattgattaatcca |
16873867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 16580124 - 16580006
Alignment:
| Q |
120 |
agattgttagaagatacaaaaaaggaatctgcaaatttacaattttcatcaaatcaaataatg-atttaggaaggatactacagaatgtttctagagaaa |
218 |
Q |
| |
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||||||||||||||| || |||| |||| || |||||||||||||||| |||| ||||||| | ||||||||||| |||||||||||||||||| | ||| |
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| T |
16580124 |
agattgttagaagatgcataaaatgaatatgtaaatttacaattttcaacaaagcaaataaaggatttaggaagggtactacagaatgtttctaaataaa |
16580025 |
T |
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| Q |
219 |
taaagcattgattaatcca |
237 |
Q |
| |
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| || |||||||||||||| |
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| T |
16580024 |
ttaatcattgattaatcca |
16580006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 120 - 237
Target Start/End: Original strand, 16615256 - 16615374
Alignment:
| Q |
120 |
agattgttagaagatacaaaaaaggaatctgcaaatttacaattttcatcaaatcaaataatg-atttaggaaggatactacagaatgtttctagagaaa |
218 |
Q |
| |
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||||||||||||||| || |||| |||| || |||||||||||||||| |||| ||||||| | ||||||||||| |||||||||||||||||| | ||| |
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| T |
16615256 |
agattgttagaagatgcataaaatgaatatgtaaatttacaattttcaacaaagcaaataaaggatttaggaagggtactacagaatgtttctaaataaa |
16615355 |
T |
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| Q |
219 |
taaagcattgattaatcca |
237 |
Q |
| |
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| || |||||||||||||| |
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| T |
16615356 |
ttaatcattgattaatcca |
16615374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 16977904 - 16978046
Alignment:
| Q |
98 |
tagaagcatccataacaaagtaagattgttagaagatacaaaaaaggaatctgcaaatttacaattttcatcaaatca-aataatgatttaggaaggata |
196 |
Q |
| |
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|||||||||||| ||||||| | |||| |||||||||||||||| |||||||||||||| ||||||||| ||||||| | || ||||| ||||||||| |
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| T |
16977904 |
tagaagcatccaagacaaagtgatattgctagaagatacaaaaaatgaatctgcaaattttcaattttcaacaaatcatacaaaggatttcggaaggata |
16978003 |
T |
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| Q |
197 |
ctacagaatgtttctagagaaataaagcattgattaatccatt |
239 |
Q |
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||||| |||| | | ||||| |||||||||||||||||||| |
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| T |
16978004 |
ctacaaaatgatggcatagaaagaaagcattgattaatccatt |
16978046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 120 - 237
Target Start/End: Original strand, 11594 - 11712
Alignment:
| Q |
120 |
agattgttagaagatacaaaaaaggaatctgcaaatttacaattttcatcaaatcaaataatg-atttaggaaggatactacagaatgtttctagagaaa |
218 |
Q |
| |
|
||||||||||||||| | ||||| ||||||| ||||||||||||||||||||| || |||| | ||||||||||| |||||||||||||||||| ||||| |
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| T |
11594 |
agattgttagaagatgctaaaaatgaatctgtaaatttacaattttcatcaaagcatataaaggatttaggaagggtactacagaatgtttctaaagaaa |
11693 |
T |
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| Q |
219 |
taaagcattgattaatcca |
237 |
Q |
| |
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| ||||||||||||||||| |
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| T |
11694 |
tcaagcattgattaatcca |
11712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 32792572 - 32792512
Alignment:
| Q |
120 |
agattgttagaagatacaaaaaaggaatctgcaaatttacaattttcatcaaatcaaataa |
180 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||||||||||| |||| ||||||| |||| |
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| T |
32792572 |
agattgctagaagatacaaaaaatgaatctgcaaatttacaatattcaacaaatcatataa |
32792512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 21628860 - 21628778
Alignment:
| Q |
98 |
tagaagcatccataacaaagtaagattgttagaagatacaaaaaaggaatctgcaaatttacaattttcatcaaatcaaataa |
180 |
Q |
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|||||||||||| ||||||| |||||| | ||||||| |||||| |||||| |||||||||||| |||| ||||||| |||| |
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| T |
21628860 |
tagaagcatccaagacaaagtgagattgctggaagatataaaaaatgaatctacaaatttacaatattcaacaaatcatataa |
21628778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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