View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19582_low_29 (Length: 244)
Name: NF19582_low_29
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 28073710 - 28073499
Alignment:
| Q |
17 |
tacttcctttaatgtatgtcgtctgtattagtctctcacgaatggcgtctaagaaaggttcacccccatccatcagagacaaaattggaacctgtagaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28073710 |
tacttcctttaatgtatgtcgtctgtattagtctctcacgaatggcgtctaagaaaggttcacccccatccatcagagacaaaattggaacctgtagaaa |
28073611 |
T |
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| Q |
117 |
tgttaattcctcatagaaaattaaatcatcattataaatagtgttcggacttgtttaatatagtttgctttttatgcgtatttgttttagtttacttatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28073610 |
tgttaattcctcatagaaaattaaatcatcattataaatagtgttcggacttgtttaatatagtttgctttttatgcgtatttgttttagtttacttatg |
28073511 |
T |
|
| Q |
217 |
aatatacataaa |
228 |
Q |
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|||||||||||| |
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| T |
28073510 |
aatatacataaa |
28073499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 28090636 - 28090425
Alignment:
| Q |
17 |
tacttcctttaatgtatgtcgtctgtattagtctctcacgaatggcgtctaagaaaggttcacccccatccatcagagacaaaattggaacctgtagaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||| | | |||||| ||||||||| ||| |
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| T |
28090636 |
tacttcctttaatgtatgtcgtctgtattagtctctcacgaatggcgtctaagataggttcatcctcagccatatgggcaaaaattcgaacctgtacaaa |
28090537 |
T |
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| Q |
117 |
tgttaattcctcatagaaaattaaatcatcattataaatagtgttcggacttgtttaatatagtttgctttttatgcgtatttgttttagtttacttatg |
216 |
Q |
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| T |
28090536 |
tgttagatcatcgtagaaaattaaatcaccattataaatagcattcagacatgtttaatataattggattttaatgtgtcattgttttagtttcattatg |
28090437 |
T |
|
| Q |
217 |
aatatacataaa |
228 |
Q |
| |
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||||| |||||| |
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| T |
28090436 |
aatatgcataaa |
28090425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 28034382 - 28034280
Alignment:
| Q |
15 |
tatacttcctttaatgtatgtcgtctgtattagtctctcacgaatggcgtctaagaaaggttcacccccatccatcagagacaaaattggaacctgtaga |
114 |
Q |
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||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||| ||| ||| || ||||||| || || |||| | ||| ||||||| |
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| T |
28034382 |
tatacttccttcaatgtatgtcgtctgtactagtcgttcacgaatggcatctaagataggctcatcctcatccattagggaaaaaaatcgaatctgtaga |
28034283 |
T |
|
| Q |
115 |
aat |
117 |
Q |
| |
|
||| |
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|
| T |
28034282 |
aat |
28034280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 28016595 - 28016510
Alignment:
| Q |
17 |
tacttcctttaatgtatgtcgtctgtattagtctctcacgaatggcgtctaagaaaggttcacccccatccatcagagacaaaatt |
102 |
Q |
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||||||||| |||||||||||| |||| ||||| ||||||||| || ||||||| ||| ||| || |||||| ||| || |||||| |
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| T |
28016595 |
tacttccttcaatgtatgtcgtttgtactagtcgctcacgaatagcatctaagacaggctcatcctcatccagcagggaaaaaatt |
28016510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 28001029 - 28000947
Alignment:
| Q |
35 |
tcgtctgtattagtctctcacgaatggcgtctaagaaaggttcacccccatccatcagagacaaaattggaacctgtagaaat |
117 |
Q |
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|||| |||||||||| |||| | ||||| ||||||| ||| ||| | ||||||| || || ||||||||||||||||||||| |
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| T |
28001029 |
tcgtatgtattagtcgctcaaggatggcatctaagataggctcattctcatccattagggaaaaaattggaacctgtagaaat |
28000947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 1439312 - 1439108
Alignment:
| Q |
17 |
tacttcctttaatgtatgtcgtctgtattagtctctcacgaatggcgtctaagaaaggttcacccccatccatcagagacaaaattggaacctgtagaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || | ||||||| || || ||| ||||||||||||| |
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| T |
1439312 |
tacttcctttaatgtatgtcgtctgtattagtctctcacgaatggcatctaagataggttcatcctcgtccatcatggaaaatattcgaacctgtagaaa |
1439213 |
T |
|
| Q |
117 |
tgttaattcctcatagaaaattaaatcatcattataaatagtgttcggacttgtttaatatagtttgctttttatgcgtatttgttttagtttacttatg |
216 |
Q |
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||||| || ||||||| ||||||||| |||||||||||| |||||||||||||||||||| || ||| ||||||| |||||||||||| ||||| |
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| T |
1439212 |
tgttagatcatcatagagaattaaatcttcattataaataacgttcggacttgtttaatataattgtttttcaatgcgtaattgttttagtttcattatg |
1439113 |
T |
|
| Q |
217 |
aatat |
221 |
Q |
| |
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||||| |
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|
| T |
1439112 |
aatat |
1439108 |
T |
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