View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19582_low_32 (Length: 234)
Name: NF19582_low_32
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 51 - 219
Target Start/End: Original strand, 40634505 - 40634673
Alignment:
| Q |
51 |
gtgtcaatgaatatttttatggagaaattgaagtttctggtgatataaaatcatctgaaggtccaatatacaaaggttataaggctgttttggattcaaa |
150 |
Q |
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| T |
40634505 |
gtgtcaatgaatatttttatggagaaattgaagtttctggtgatataaaatcatctgaaggtccaatatacaaaggttataaggctgttttggattcaaa |
40634604 |
T |
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| Q |
151 |
atccacagatgaaacattggtaagctaccaatcttgttttgattcattcaaaatcatgctaagtataat |
219 |
Q |
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| T |
40634605 |
atccacagatgaaacattggtaagctaccaatcttgttttgattcattcaaaatcatgctaagtataat |
40634673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 58 - 219
Target Start/End: Original strand, 40646112 - 40646273
Alignment:
| Q |
58 |
tgaatatttttatggagaaattgaagtttctggtgatataaaatcatctgaaggtccaatatacaaaggttataaggctgttttggattcaaaatccaca |
157 |
Q |
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| T |
40646112 |
tgaatattttaatggagaaattgaagtttctggtgatataaaatcatgtgatgattcaatatacaaaggttataaagcagttttggattcaaaatccact |
40646211 |
T |
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| Q |
158 |
gatgaaacattggtaagctaccaatcttgttttgattcattcaaaatcatgctaagtataat |
219 |
Q |
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| T |
40646212 |
gatgaaacattggtaagctattcatcttgttttgattcattctaaaacatgctgagtataat |
40646273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 171
Target Start/End: Complemental strand, 4781203 - 4781083
Alignment:
| Q |
51 |
gtgtcaatgaatatttttatggagaaattgaagtttctggtgatataaaatcatctgaaggtccaatatacaaaggttataaggctgttttggattcaaa |
150 |
Q |
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| T |
4781203 |
gtgtcaatgaatatttttatggagaaattgatagccccggagaaaacaaatcatctgaggatcccatatacaaaggttacaagaatgttttggattcaaa |
4781104 |
T |
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| Q |
151 |
atccacagatgaaacattggt |
171 |
Q |
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| T |
4781103 |
atccattgatgaaacactggt |
4781083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 31134395 - 31134465
Alignment:
| Q |
129 |
ataaggctgttttggattcaaaatccacagatgaaacattggtaagctaccaatcttgttttgattcattc |
199 |
Q |
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| T |
31134395 |
ataagactgttttggattcaaagaccacagatgaaacctttgtaagctatcaatcttattttgtttcattc |
31134465 |
T |
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