View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19582_low_33 (Length: 231)
Name: NF19582_low_33
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 590241 - 590442
Alignment:
| Q |
15 |
cacagatcaatgaatgggattgattattgcatgcaaggaatcttgatccttacaccaattggagttgaatatggacctacttttctgttacnnnnnnnnn |
114 |
Q |
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| T |
590241 |
cacaaatcaataaacgagattgattattgcgtgcaaggaatcttgatccttacaccaattggagttgaatatggacctacttttctgttacttttttctt |
590340 |
T |
|
| Q |
115 |
nnncggataaatttgattgaaatgattatgtgttagccttactctgaataaactggcgattttgagtttacgtctacataagctttgaggttttgtttgt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
590341 |
tttcggataaatttgattgaaatgattatgtgttagccttactctgaataaactggcgattttgagtttacgtctacataagctttgaggttttgtttgt |
590440 |
T |
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| Q |
215 |
tg |
216 |
Q |
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|| |
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| T |
590441 |
tg |
590442 |
T |
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