View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19582_low_36 (Length: 220)
Name: NF19582_low_36
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 29728067 - 29727851
Alignment:
| Q |
1 |
ttcatataagaaaaatattctcttaaattaagttagaaaacaaatatagaaaatatttacaaaagaatatataaggtactaattaacaaaccttgttttg |
100 |
Q |
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| T |
29728067 |
ttcatataagaaaaatattctcttaaattaagttagaaaacaaatatagaaaatatttacaaaagaatatataaggtactaattaacgaaccttgttttg |
29727968 |
T |
|
| Q |
101 |
ggcatatttgtctactgtagtaacatgtgcttttccg------aagattgca---------tccttattatcaaagagaactccgaaaaccaacaggagt |
185 |
Q |
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| T |
29727967 |
ggcatatttgtctactgtagtaacatgtgcttttccgaggtttaagattccatcaatacgttccttattatcaaagagaactccgaaaaccaacaggagt |
29727868 |
T |
|
| Q |
186 |
gtagataatgtgagaaa |
202 |
Q |
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||||||||| ||||||| |
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| T |
29727867 |
gtagataatatgagaaa |
29727851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 38514484 - 38514537
Alignment:
| Q |
85 |
aacaaaccttgttttgggcatatttgtctactgtagtaacatgtgcttttccga |
138 |
Q |
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| T |
38514484 |
aacaaaccttgtttttggcatctttgtctactttagtaaaatgtggttttccga |
38514537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 16837600 - 16837393
Alignment:
| Q |
1 |
ttcatataagaaaaatattctcttaaattaagttagaaaacaaatatagaaaatatttacaaaagaatatataaggtactaattaacaaaccttgttttg |
100 |
Q |
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| T |
16837600 |
ttcatataagaaaaatattctcttaaattaagttagaaaacaaatat---------ttacaaaagaatatataaggtactaattaacgaaccttgttttg |
16837510 |
T |
|
| Q |
101 |
ggcatatttgtctactgtagtaacatgtgcttttccgaag------attgca---------tccttattatcaaagagaactccgaaaaccaacaggagt |
185 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||| ||| || |||||||||| |||||||||||||||| ||||||||||| |
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| T |
16837509 |
ggcatatttgtctactatagtaacatgtgcttttccaaagtttaacattccatcaatacgttccttattatgaaagagaactccgaaagccaacaggagt |
16837410 |
T |
|
| Q |
186 |
gtagataatgtgagaaa |
202 |
Q |
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||||||||| ||||||| |
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| T |
16837409 |
gtagataatatgagaaa |
16837393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 24003510 - 24003463
Alignment:
| Q |
89 |
aaccttgttttgggcatatttgtctactgtagtaacatgtgcttttcc |
136 |
Q |
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||||||||||| || || |||||||||| ||||||||||||||||||| |
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|
| T |
24003510 |
aaccttgtttttggtatttttgtctactttagtaacatgtgcttttcc |
24003463 |
T |
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