View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19582_low_38 (Length: 214)
Name: NF19582_low_38
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_low_38 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 3e-96; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 7683704 - 7683491
Alignment:
| Q |
1 |
gattcaattccgcacatattctacgtccaacaccaaaacgtataacctcaaaatcatttcccttcacatcaacatcaaagttctcaccacctagtaagaa |
100 |
Q |
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|||||||| |||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
7683704 |
gattcaatcccgcgcatattctacatccaacaccaaaaagtataacctcaaaatcatttcccttcacatcaacattacagttctcaccacctagtaagaa |
7683605 |
T |
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| Q |
101 |
cctttcgggtttgaacattaatgatcaacccattttcctgggccatgagctatggcccataccacatgagtggatccgcgcatgaccacaaacccgttta |
200 |
Q |
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| T |
7683604 |
cctttcaggtttgaacattaatgatcaacccattttcctgggccatgagctatggcccataccacatgagtggatccgcgcatgactacaaacccattta |
7683505 |
T |
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| Q |
201 |
tttaaaatttaata |
214 |
Q |
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|||||||||||||| |
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| T |
7683504 |
tttaaaatttaata |
7683491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 7683107 - 7682945
Alignment:
| Q |
1 |
gattcaattccgcacatattctacgtccaacaccaaaacgtataacctcaaaatcatttcccttcacatcaacatcaaagttctcaccacctagtaagaa |
100 |
Q |
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|||||||| | |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||| |
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| T |
7683107 |
gattcaatccagcacatattctacgtccagcgccaaaaggtataacctcaaaatcatttcccttcacatcaacatcacaattctcaccacctggtaagaa |
7683008 |
T |
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| Q |
101 |
cctttcgggtttgaacattaat-gatcaacccattttcctgggccatgagctatggcccatac |
162 |
Q |
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| T |
7683007 |
cctctcgggtttgaactttaatggatcaacccatatttcttggtcacgagctatggcccatac |
7682945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 7620037 - 7620158
Alignment:
| Q |
14 |
acatattctacgtccaacaccaaaacgtataacctcaaaatcatttcccttcacatcaacatcaaagttctcaccacctagtaagaacctttcgggtttg |
113 |
Q |
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|||||||||||||||| |||||||| ||||||| ||||||||||||||||| |||||||||||| | |||||||||||| ||||||||||||| |||||| |
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| T |
7620037 |
acatattctacgtccagcaccaaaaggtataacttcaaaatcatttcccttaacatcaacatcacacttctcaccacctggtaagaacctttcaggtttg |
7620136 |
T |
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| Q |
114 |
aacattaat-gatcaacccatt |
134 |
Q |
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||| |||| |||||||||||| |
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| T |
7620137 |
aactctaatggatcaacccatt |
7620158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 7663855 - 7663734
Alignment:
| Q |
14 |
acatattctacgtccaacaccaaaacgtataacctcaaaatcatttcccttcacatcaacatcaaagttctcaccacctagtaagaacctttcgggtttg |
113 |
Q |
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|||||||||||||||| |||||||| ||||||| ||||||||||||||||| |||||||||||| | |||||||||||| ||||||||||||| |||||| |
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| T |
7663855 |
acatattctacgtccagcaccaaaaggtataacttcaaaatcatttcccttaacatcaacatcacacttctcaccacctggtaagaacctttcaggtttg |
7663756 |
T |
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| Q |
114 |
aacattaat-gatcaacccatt |
134 |
Q |
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||| |||| |||||||||||| |
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| T |
7663755 |
aactctaatggatcaacccatt |
7663734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 7669553 - 7669451
Alignment:
| Q |
13 |
cacatattctacgtccaacaccaaaacgtataacctcaaaatcatttcccttcacatcaacatcaaagttctcaccacctagtaagaacctttcgggttt |
112 |
Q |
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||||||||||||||||| |||||||| ||||||| ||||||||||||||||| |||||||||||| | ||||||||||||| |||||||||||| ||||| |
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| T |
7669553 |
cacatattctacgtccagcaccaaaaggtataacttcaaaatcatttcccttaacatcaacatcacacttctcaccacctaataagaacctttcaggttt |
7669454 |
T |
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| Q |
113 |
gaa |
115 |
Q |
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||| |
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| T |
7669453 |
gaa |
7669451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 7683405 - 7683350
Alignment:
| Q |
159 |
ataccacatgagtggatccgcgcatgaccacaaacccgtttatttaaaatttaata |
214 |
Q |
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| T |
7683405 |
ataccacatgagtggatgcgtgcctgactacaaacttgtttatttaaaatttaata |
7683350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 45481355 - 45481276
Alignment:
| Q |
12 |
gcacatattctacgtccaacaccaaaacgtataacctcaaaatcatttcccttcacatcaacatcaaagttctcaccacc |
91 |
Q |
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| T |
45481355 |
gcacatattctacgtccagcaccaaaaggtatcacctcaaagtcatttcccctaacatcaacatcaaacttctcaccacc |
45481276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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