View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19582_low_39 (Length: 205)
Name: NF19582_low_39
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 8756399 - 8756586
Alignment:
| Q |
1 |
tggtcgttccaattaaaactgcagctgctgttaaagcatagctccaattaaagtagccctctatgattcctgcatctttttccttgtctagttggtcaat |
100 |
Q |
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| T |
8756399 |
tggtcgttccaattaaaactgcagctgctgttaaagcatagctccaattaaagtagccctctatgattcctgcatctttttccttgtctagttggtcaat |
8756498 |
T |
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| Q |
101 |
gccaaaggctaaggaagaggctcttacaccaccagctccaatggagattaggcatagagaagagtataagaaagcaagttgtgatatt |
188 |
Q |
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| T |
8756499 |
gccaaaggctaaggaagaggctcttacaccaccagctccaatggagattaggcatagagaagagtataagaaagcaagttgtgatatt |
8756586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 8748848 - 8749032
Alignment:
| Q |
1 |
tggtcgttccaattaaaactgcagctgctgttaaagcatagctccaattaaagtagccctctatgattcctgcatctttttccttgtctagttggtcaat |
100 |
Q |
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||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8748848 |
tggtcgttccaattaaaactgcagctgttgctaaagcataggtccaattaaagtagccctctatgattcctgcatctttttccttgtctagttggtcaat |
8748947 |
T |
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| Q |
101 |
gccaaaggctaaggaagaggctcttacaccaccagctccaatggagattaggcatagagaagagtataagaaagcaagttgtgat |
185 |
Q |
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| T |
8748948 |
gccaaagggtaaggaagaagctcttacaccaccagctccaatggcgattaggcatagagaagagtataagaaagcaagttgtgat |
8749032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 8766435 - 8766602
Alignment:
| Q |
18 |
actgcagctgctgttaaagcatagctccaattaaagtagccctctatgattcctgcatctttttccttgtctagttggtcaatgccaaaggctaaggaag |
117 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| || | |
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| T |
8766435 |
actgcagctgctgttaaagcataggtccaattaaagtagccctctatgattcctgcatctttttccttgtttagttgatcaatgccaaaggctaaagagg |
8766534 |
T |
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| Q |
118 |
aggctcttacaccaccagctccaatggagattaggcatagagaagagtataagaaagcaagttgtgat |
185 |
Q |
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| T |
8766535 |
aagctcttacaccaccagctccaatggagattaagcatagagaagagtataagaaagcaagctgtgat |
8766602 |
T |
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