View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19582_low_5 (Length: 463)
Name: NF19582_low_5
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 149 - 446
Target Start/End: Original strand, 34056505 - 34056801
Alignment:
| Q |
149 |
gctgagtacgaatattagttggatcagcacccaaattttcaagaacacatgctgccacaccctcaccctcgcgaagaaaacccaataacaggtgctcaga |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34056505 |
gctgagtacgaatattagttggatcagcacccaaattttcaagaacaggtgctgccacaccctcaccctcgcgaagaaaacccaataacaggtgctcaga |
34056604 |
T |
|
| Q |
249 |
tcggatataattatgatctagaaatttcataatgtaagctaaaatttcagcaagcacaaacaaagtattgaacgtgaatacaaatttttaaccacactca |
348 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
34056605 |
tcggatataattatgatctagaaattccataatgtaagctaaaatttcagcaagcacaaacaaagtattgaacgtgaatacaaa-ttttaactacactca |
34056703 |
T |
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| Q |
349 |
ataaaagaaagagcgaaaaggcaagccaaaaaatgaactaacaacaattcatagataaatttacacacattttgaatgtatttaattcatattgctca |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
34056704 |
ataaaagaaagagcgaaaaggcaagccaaaaaatgaactaacaacaattcatagataaatttagactcattttgaatgtatttaattcatattgctca |
34056801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 34056365 - 34056455
Alignment:
| Q |
8 |
gacatcatcaacaatctgtcgttaagaaaacttggattgtaagttacctcctctgctagcaccaaattaaattaagttgaaagtgcattcc |
98 |
Q |
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| T |
34056365 |
gacatcatcaacaatctgtcgttaagaaaacttggattgtaagttacctcctctgctagcaccaaattaaattaagttgaaagtgcattcc |
34056455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 157 - 339
Target Start/End: Complemental strand, 40242767 - 40242585
Alignment:
| Q |
157 |
cgaatattagttggatcagcacccaaattttcaagaacacatgctgccacaccctcaccctcgcgaagaaaacccaataacaggtgctcagatcggatat |
256 |
Q |
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|||||||||||||| || |||||||||||||||||||||| |||||||||||| |||||||| ||||||| |||||| | || ||||||||||| ||||| |
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| T |
40242767 |
cgaatattagttgggtcggcacccaaattttcaagaacacgtgctgccacaccttcaccctctcgaagaagacccaaaagcaagtgctcagatccgatat |
40242668 |
T |
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| Q |
257 |
aattatgatctagaaatttcataatgtaagctaaaatttcagcaagcacaaacaaagtattgaacgtgaatacaaatttttaa |
339 |
Q |
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|||| ||| ||||||||| || ||||||||| ||| ||||||||||||||| |||||||||| |||||||||| ||||||||| |
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| T |
40242667 |
aattgtgacctagaaattccaaaatgtaagccaaactttcagcaagcacaagcaaagtattgcacgtgaatactaatttttaa |
40242585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 40243063 - 40243006
Alignment:
| Q |
11 |
atcatcaacaatctgtcgttaagaaaacttgga-ttgtaagttacctcctctgctagc |
67 |
Q |
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|||||| |||||||||| | ||||||||| || |||||||||||||||||||||||| |
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| T |
40243063 |
atcatctacaatctgtcatgaagaaaactacgaattgtaagttacctcctctgctagc |
40243006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 157 - 301
Target Start/End: Complemental strand, 47379671 - 47379527
Alignment:
| Q |
157 |
cgaatattagttggatcagcacccaaattttcaagaacacatgctgccacaccctcaccctcgcgaagaaaacccaataacaggtgctcagatcggatat |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| |||||| | |||||||||||||| ||||| |
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| T |
47379671 |
cgaatattagttggatcagcacccaaattttcaagaacacgtgcggccacaccctcaccctctcgaagaagacccaaaagcaggtgctcagatccgatat |
47379572 |
T |
|
| Q |
257 |
aattatgatctagaaatttcataatgtaagctaaaatttcagcaa |
301 |
Q |
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|||| ||| ||||||||| || ||||||||| ||||||||||||| |
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| T |
47379571 |
aattgtgacctagaaattccaaaatgtaagccaaaatttcagcaa |
47379527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 157 - 303
Target Start/End: Complemental strand, 47815202 - 47815056
Alignment:
| Q |
157 |
cgaatattagttggatcagcacccaaattttcaagaacacatgctgccacaccctcaccctcgcgaagaaaacccaataacaggtgctcagatcggatat |
256 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||| |||||||||||| |||||||| ||||||| | |||| | ||||| ||||| || |||| |
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| T |
47815202 |
cgaatattagttggatcatcgcccaaattttcaagaacacgtgctgccacaccttcaccctctcgaagaagatccaaaagcaggttctcagttccaatat |
47815103 |
T |
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| Q |
257 |
aattatgatctagaaatttcataatgtaagctaaaatttcagcaagc |
303 |
Q |
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|||| ||| ||||||||| || |||||||| ||||||||||||||| |
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| T |
47815102 |
aattgtgacctagaaattccaaaatgtaaggcaaaatttcagcaagc |
47815056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 47815478 - 47815423
Alignment:
| Q |
12 |
tcatcaacaatctgtcgttaagaaaacttggattgtaagttacctcctctgctagc |
67 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
47815478 |
tcatcaacaatctgtcattaagaaaactaggattgtaagttacctcctctgctagc |
47815423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 47380020 - 47379965
Alignment:
| Q |
12 |
tcatcaacaatctgtcgttaagaaaacttggattgtaagttacctcctctgctagc |
67 |
Q |
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|||| ||||||||||| || |||||||| ||||||||||||||||||||||||||| |
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| T |
47380020 |
tcattaacaatctgtcattgagaaaactaggattgtaagttacctcctctgctagc |
47379965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 375 - 442
Target Start/End: Complemental strand, 47379456 - 47379389
Alignment:
| Q |
375 |
caaaaaatgaactaacaacaattcatagataaatttacacacattttgaatgtatttaattcatattg |
442 |
Q |
| |
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|||||||| |||||||||||| || ||||||| |||| || || ||||||||||||||||||| |||| |
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| T |
47379456 |
caaaaaataaactaacaacaactcgtagataattttaaactcagtttgaatgtatttaattcaaattg |
47379389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 45111893 - 45111824
Alignment:
| Q |
157 |
cgaatattagttggatcagcacccaaattttcaagaacacatgctgccacaccctcaccctcgcgaagaa |
226 |
Q |
| |
|
||||||||||| |||||||| || | ||||||||||||| |||||| || ||||||||||| ||||||| |
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| T |
45111893 |
cgaatattagtaggatcagcgcctaggttttcaagaacacgtgctgctactccctcaccctctcgaagaa |
45111824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 17717221 - 17717166
Alignment:
| Q |
12 |
tcatcaacaatctgtcgttaagaaaacttggattgtaagttacctcctctgctagc |
67 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||| |||||| |
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| T |
17717221 |
tcatcaacaatctgtcattaagaaaactaggattgtaagttacctcctccgctagc |
17717166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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