View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19582_low_6 (Length: 446)
Name: NF19582_low_6
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 38768339 - 38767917
Alignment:
| Q |
1 |
tagaacgtggcaagatttgctaaaataatagaaatattttgaggtagaagaagagaattcaacctgtgtgaaaccatccatctattatggcttcttttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38768339 |
tagaacgtggcaagatttgctaaaataatagaaatattttgaggtagaagaagagaattcaacctgtgtgaaaccatccatctattatggcttcttttgt |
38768240 |
T |
|
| Q |
101 |
taactcaggatttttatggtaaccagtgaaaacacttttgcctctgacacatatctccccacatggaggagttccaagaggattgtaacccatgtctgga |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38768239 |
taactcaggattcttatggtaaccagtgaaaacacttttgcctctgacacatatctctccacatggcggagttccaagaggattgtaacccatgtctgga |
38768140 |
T |
|
| Q |
201 |
acttcctccagccgcaattcattgaatacagttacaacaccaacattgcctagcatgcacatttcatctggaaatgtaagagtagttggtccacatgttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38768139 |
acttcctccagccgcaattcattgaatacagttacaacaccaacattacctagcatgcacatttcatctggaaatgtaagagtagttggtccacatgttt |
38768040 |
T |
|
| Q |
301 |
ctgtcaaacctggattaaccttaatatcagtgtatcattcattatattgtatagctccctacaaacttatattatatataagcaatttggtccaaggtcc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38768039 |
ctgtcaaacctggattaaccttaatatcagtgtatcattcattatattgtatagctccctacaaactt-----atatataagcaatttggtccaaggtcc |
38767945 |
T |
|
| Q |
401 |
ttaccatagccttggcatacaaaggcac |
428 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
38767944 |
ttaccatagccttggcatacaaaggcac |
38767917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 56 - 320
Target Start/End: Original strand, 44995964 - 44996228
Alignment:
| Q |
56 |
aattcaacctgtgtgaaaccatccatctattatggcttcttttgttaactcaggatttttatggtaaccagtgaaaacacttttgcctctgacacatatc |
155 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| ||||| ||||| |||| |||||| ||| ||||| | ||||||| |
|
|
| T |
44995964 |
aattcaacctgtgtgaaaccatccatctactatggattcctttgttaactcagggtttttgtggtagccagagaaaactgatttccctctaagacatatc |
44996063 |
T |
|
| Q |
156 |
tccccacatggaggagttccaagaggattgtaacccatgtctggaacttcctccagccgcaattcattgaatacagttacaacaccaacattgcctagca |
255 |
Q |
| |
|
|| ||||||| |||| |||||||||||||||||||||| ||||||||||| || || | | ||| ||| ||| || |||| |||||| | || |||| |
|
|
| T |
44996064 |
tcaccacatgaaggatttccaagaggattgtaacccatctctggaacttcttctagttgtatttcgttgtatatagatacaggaccaacggtaccaagca |
44996163 |
T |
|
| Q |
256 |
tgcacatttcatctggaaatgtaagagtagttggtccacatgtttctgtcaaacctggattaacc |
320 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| ||||| ||||| ||||||||| |||||||| |
|
|
| T |
44996164 |
tgcacatttcatcaggaaatgcaagagtagttgacccacaagtttcagtcaaacctagattaacc |
44996228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University