View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19582_low_8 (Length: 409)
Name: NF19582_low_8
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 8e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 39112520 - 39112715
Alignment:
| Q |
19 |
gtaactatctttcattcgcttacaaatccaacaaatcattcccatgtcttttcatgnnnnnnnnnnnnnnnnnatcattcatactttccaaccttatttt |
118 |
Q |
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| T |
39112520 |
gtaactatctttcattcgcttacaaatccaacaaatcattcccatgtcttttcatgttttttatttttattttatcattcatattttccaaccttatttt |
39112619 |
T |
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| Q |
119 |
catgccatgcatataatattgtatttgcactatttgatgatgattgatctagaattcaaactttactacattgctttgtgattcaaacttgaaacc |
214 |
Q |
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| T |
39112620 |
catgccatgcatataatattgtatttgcactatttgatgatgattgatctagaattcaaactttactacattgctttgtgattcaaacttgaaacc |
39112715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 279 - 404
Target Start/End: Original strand, 39112780 - 39112907
Alignment:
| Q |
279 |
acttgctgtgctaatgtttgcttttttgtggctttat--agttcaataatggctgctcacgacgcttctgataacaatttagggttttctgtagactccc |
376 |
Q |
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| T |
39112780 |
acttgctgtgctaatgtttgcttttttgtggctttatgtagttcaataatggctgctcacgacgcttctgataacaatttagggttttctgtagactccc |
39112879 |
T |
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| Q |
377 |
aactggatgacaatgtccctttgcttct |
404 |
Q |
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| T |
39112880 |
aactggatgacaatgtccctttgattct |
39112907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 39103547 - 39103744
Alignment:
| Q |
19 |
gtaactatctttcattcgcttacaaatccaacaaatcattcccatgtc-ttttcatgnnnnnnnnnnnnnnnnnatcattcatactttccaaccttattt |
117 |
Q |
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| T |
39103547 |
gtaactatctttcattcgcttacaaatccaacaaaacattcccatgtctttttcatg-------------ttttatcattcata-tttccaaccttattt |
39103632 |
T |
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| Q |
118 |
tcatgccatgcata-------------taatattgtatttgcactatttgatgatgattgatctagaattcaaactttactacat---tgctttgtgatt |
201 |
Q |
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| T |
39103633 |
tcatgacatgcatatgaaaaaaaagcttaatattggattagcactgtttggtgatgattgatctag-attcaaactttactacattaatgctttgtgatt |
39103731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 398
Target Start/End: Original strand, 32984616 - 32984699
Alignment:
| Q |
315 |
tagttcaataatggctgctcacgacgcttctgataacaatttagggttttctgtagactcccaactggatgacaatgtcccttt |
398 |
Q |
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| T |
32984616 |
tagttcaataatggctgctgataaagcttcggataatcagttagggttttgtgaagactccaaaatggatgataatgtcccttt |
32984699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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