View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19583_high_11 (Length: 510)

Name: NF19583_high_11
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19583_high_11
NF19583_high_11
[»] chr4 (3 HSPs)
chr4 (148-343)||(44952656-44952852)
chr4 (409-493)||(44952918-44953010)
chr4 (15-76)||(44952524-44952585)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 148 - 343
Target Start/End: Original strand, 44952656 - 44952852
Alignment:
Q  148 ctcaaaacaatttaagtgtatgtttgattctacttttggagaaattaaaactggttctagagatatataattaatttt-tgatatgttaggtttttctag 246  Q
    |||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44952656 ctcaaaacaatttaagtgcatgtttgattctacttttgaaggaattaaaactggttctagagatatataattaattttttgatatgttaggtttttctag 44952755  T
Q  247 agttgacttgattttgtctcccaaattcattctaatttgaagcttttgattataaaatttgttgtttaccttaaattgattttacctgaaagtatcc 343  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44952756 agttgaattgattttgtctcccaaattcattctaatttgaagcttttgattataaaatttgttgtttaccttaaattgattttacctgaatgtatcc 44952852  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 409 - 493
Target Start/End: Original strand, 44952918 - 44953010
Alignment:
Q  409 caaaataaagttttgtcataactgaaccaaacatacatta--------tgttttaaaactgaaaatgtaaaaagtaaattaacacaaaaatgt 493  Q
    ||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  44952918 caaaataaagttttgtcataactgaaccaaacatacattatgttttgttgttttaaaactgaaaatgtaaaaagtaaattaacacaaaaatgt 44953010  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 44952524 - 44952585
Alignment:
Q  15 aatatgtccgtacaaaacattttaaggacctagtatatgattaggaagtaaattcttgcagc 76  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44952524 aatatgtccgtacaaaacattttaaggacctagtatacgattaggaagtaaattcttgcagc 44952585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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