View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_high_13 (Length: 481)
Name: NF19583_high_13
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 94 - 463
Target Start/End: Complemental strand, 15593887 - 15593521
Alignment:
| Q |
94 |
aaatttgtatttgttattcgtgccaaatacatacatgacaccaaactttaaagtaaccacatatctaaaaaataataatttttttgctgagatatgagnn |
193 |
Q |
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| T |
15593887 |
aaatttgtatttgttattcgtgccaaatacat----gacaccaaacttcaaagtaaccacgtatctaaaaaataataattttcttgctgagatatgagtt |
15593792 |
T |
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| Q |
194 |
nnnnnnnnnnn-------agaatcgttgatatatgagatgaaaatctccattgtaataatattcatagatagtaaaagctaacatggctgacctccatca |
286 |
Q |
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| T |
15593791 |
tttttattttttatttttaaaatcgttgatatatgagatgaaaatctccattgtaataatattcatagatagtaaaagctaacatggctgacctacatca |
15593692 |
T |
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| Q |
287 |
cctccctagctagaaatgatcttcctctcgtcaattcccatcacccacattattcttatgatttatgaactaaaaagacattactaacacggtggctccc |
386 |
Q |
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| T |
15593691 |
cctccctagctagaaatgatcttcctctcgtcaattcccatcacccacgttattcttatgatttatgaactaaaaagacattactaacatggtggctccc |
15593592 |
T |
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| Q |
387 |
aaaaggttaattaactttaacaccgtgcgaaataaccaaaaaacaagcgaaatatgaattattttgtatccaagaat |
463 |
Q |
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| T |
15593591 |
aaaaggttaat------taacaccgtgcgaaataaccaaaaaacaagcgaaatatgaattattttgtatccaagaat |
15593521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 15594025 - 15593967
Alignment:
| Q |
1 |
tgacttttatgttaatatttttcgctctcctaataattttttggtcaaggacaaaaaac |
59 |
Q |
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| T |
15594025 |
tgacttttatgttaatatttttcgctcccctaataattttttggtcaaggacaaaaaac |
15593967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 101
Target Start/End: Complemental strand, 15593933 - 15593900
Alignment:
| Q |
68 |
gtcgcgaataatactttaaagtaaacaaatttgt |
101 |
Q |
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| T |
15593933 |
gtcgcgaataatactttaaagtaaacaaatttgt |
15593900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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