View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_high_19 (Length: 422)
Name: NF19583_high_19
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 12 - 401
Target Start/End: Original strand, 10689089 - 10689478
Alignment:
| Q |
12 |
atgaacatagagaagacataactgctgcttttggaataccaaaggaattatcacaaattgatttcaaagcgacattgaggccaattgagagtggttcagt |
111 |
Q |
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| T |
10689089 |
atgaacatagagaagacataactgctgcttttggaataccaaaggaattatcacaaattgatttcaaagcaacattgaggccaattgagagtggttcagt |
10689188 |
T |
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| Q |
112 |
cacaaaacttgcctcaaagtttcttctcccttgggatcccatcatcaatgcacatatattgcagataatccatggtggaataattgcatccttaacttca |
211 |
Q |
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| T |
10689189 |
cacaaaacttgcctcaaagtttcttctcccttgggatcccatcatcaatgcacatatattgcagataatccacggtggaataattgcatccttaacttca |
10689288 |
T |
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| Q |
212 |
atgctataaaaaagaccatttgatgatccttgtgcaatgttttcagctcttgtcgtttccatgcatttaatatcaggagaagtcatagcagaattttgga |
311 |
Q |
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| T |
10689289 |
atgctataaaaaaggtcatttgatgatccttgtgcaatatcttcagctcttgtcatctccatgcatttaatatcaggagaagtcatagcagaattttgga |
10689388 |
T |
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| Q |
312 |
atggaacaggagaacacaagacaggtacatcttccacaccggatagcgaggttaatagagttttgtaattcagtaataggtcgtataaac |
401 |
Q |
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| T |
10689389 |
atggaacaggagaacacaagacaggtacatcttccacaccggacagcgaggccaatagagttttgtaatttagtaataggtcgtataaac |
10689478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 43559349 - 43559255
Alignment:
| Q |
154 |
catcaatgcacatatattgcagataatccatggtggaataattgcatccttaacttcaatgctataaaaaagaccatttgatgatccttgtgcaa |
248 |
Q |
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| T |
43559349 |
catcaatgcacatatacggctgataatccaaggtggaataaatgtatccttaatttcaatgctacataaaagaccatctgatgatccttgtgcaa |
43559255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 336
Target Start/End: Complemental strand, 43558935 - 43558882
Alignment:
| Q |
283 |
atcaggagaagtcatagcagaattttggaatggaacaggagaacacaagacagg |
336 |
Q |
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| T |
43558935 |
atcaggagaagtcaaagcagaactttggaacggaacaggagaacacaagacagg |
43558882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 43560314 - 43560265
Alignment:
| Q |
12 |
atgaacatagagaagacataactgctgcttttggaataccaaaggaatta |
61 |
Q |
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|||||||||| |||||| ||||||| |||| |||||| |||||||||||| |
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| T |
43560314 |
atgaacatagggaagacgtaactgcagcttctggaatgccaaaggaatta |
43560265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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