View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_high_2 (Length: 716)
Name: NF19583_high_2
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 10 - 273
Target Start/End: Complemental strand, 27568174 - 27567911
Alignment:
| Q |
10 |
tcgaagaaaattacaatgtaaaaatgatccacaccctgacacacacaatgtagaggcatgatcaataacaccacgatgttgaagattgtccttattgact |
109 |
Q |
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| T |
27568174 |
tcgaaaaaaattacaatgtaaaaatgatccacaccctgacacacacaatgtagaggcatgatcaataacaccacgacgttgaagaatgtccttattgact |
27568075 |
T |
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| Q |
110 |
atatatattttagatttttatgttcacaaacgttcttccgctaatgaagttgagtataatagaaagagttagactctcacaatcaaatgaatcaataatc |
209 |
Q |
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| T |
27568074 |
atatatattttagatttttctgttcacaaacgttcttccgttaatgaagttgagtataatagaaggagttagattctcacaatcaaatgaatcaataatc |
27567975 |
T |
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| Q |
210 |
gaactctgactaagaacgatacccatacttagtgttcgacatgtttcaaataaacttacacatt |
273 |
Q |
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| T |
27567974 |
gaactctgactaagaacgatacccatacttagtgttcgacatatctcaaataaacttacacatt |
27567911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 454 - 699
Target Start/End: Complemental strand, 27567805 - 27567560
Alignment:
| Q |
454 |
ctaatgccattttacattgactcttaatattattggtatattaattctcgttttcggtaagtatcaaagtcaattttgttcatgaggtaaaagtcgttag |
553 |
Q |
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| T |
27567805 |
ctaatgccattttacattgactcttaatattattggtatattaattctcgttttcggtaagtatcaaagtcaattttgttcatgaggtaaaagtcgttag |
27567706 |
T |
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| Q |
554 |
cctaacatgaatttatgtatcaactttattaaattaattaacataaatcttatcacatcataatgacatattaaataattttagacttaccgaaaaataa |
653 |
Q |
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| T |
27567705 |
cctaacatgaatttatgtatcaactttattaaattaattaacattaatcttatcacatcataatgacatattaaataattttagattcaccgaaaattaa |
27567606 |
T |
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| Q |
654 |
atagagataatctatatctatatcatatatacgtttaatctgattg |
699 |
Q |
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| T |
27567605 |
atagagataatcaatatctatatcatatatacgtttaatctgattg |
27567560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 27567854 - 27567804
Alignment:
| Q |
274 |
aaatcgctttaaacttacagatatattgagccggcactgtatcaaacaact |
324 |
Q |
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| T |
27567854 |
aaatcgctttaaacctacagatatattgagccggcactgtatcaaacaact |
27567804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 41683533 - 41683600
Alignment:
| Q |
196 |
atgaatcaataatcgaactctgactaagaacgatacccatacttagtgttcgacatgtttcaaataaa |
263 |
Q |
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| T |
41683533 |
atgaatcaatattcgaatattgactaagaatgatacccatatttagtgttatacatgtttcaaataaa |
41683600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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