View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_high_21 (Length: 410)
Name: NF19583_high_21
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_high_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 6910088 - 6909680
Alignment:
| Q |
1 |
atagaataaacctaaaagaaaatgttaatttctttccgtaataaaattcaagcttcaaacgatacatcgatttcttggaagtctctaagcaaaaacaata |
100 |
Q |
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| T |
6910088 |
atagaataaacctaaaataaaatgttaatttctttccgtaataaaattcaagcttcaaacgatacatcgatttcttggaagtctctaagcaaaaacaata |
6909989 |
T |
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| Q |
101 |
gataaagtttttgtgagataagttaggtgaagaaggaaaaacaaaggttattaaagacgtgtatattccctcttgaacttaccttgcaaaacaacaaatg |
200 |
Q |
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| T |
6909988 |
gattaagtttt-gtgagataagttaggtgaagaaggaaaaacaaaggttattaaagacgtgtatattccctcttgaacttaccttgcaaaacaacaaatg |
6909890 |
T |
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| Q |
201 |
caaaaatgtgcaagtaaccatcaactttttcatcacactcacaattcaaacataacttatccctttcaatgcacttcctccatatgcaaagaataggatg |
300 |
Q |
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| T |
6909889 |
caaaaatgtgcaagtaaccatcaactttttcatcccactcacaattcaaacataacttatccctttcaatgcacttcctccatatgcaaagaataggatg |
6909790 |
T |
|
| Q |
301 |
ttgaatttatccactcaaaattttaaagagttaaacatatttttagttcgtataaaattataataagttgtttttagtatctgtacaaattttcttcaaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6909789 |
ttgaatttatccactcaaaattttaaagagttaaacatatttttagttcttataaaattataataagttgtttttagtatctgtacaaattttcttcaaa |
6909690 |
T |
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| Q |
401 |
ttttagattt |
410 |
Q |
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| T |
6909689 |
ttttaaattt |
6909680 |
T |
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