View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_high_24 (Length: 373)
Name: NF19583_high_24
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 358
Target Start/End: Original strand, 325069 - 325417
Alignment:
| Q |
9 |
catcatcaatagactttagcgtcttcaccatgttggaaataccaaacaaacgatgtgcattggcaagcatttttggtttatcggctggaaaatacggagc |
108 |
Q |
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| T |
325069 |
catcatcaatagactttagcgtcttcaccatgttggaaataccaaacaaacgatgtgcattggcaagcatttt-ggtttatcggctggaaaataaggagc |
325167 |
T |
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| Q |
109 |
taaagggcaatctggagtacactttcttctttgatatttgcaggctgcacaagccttgtttattctgtgaatatccattagtaggagtaaaagggttatt |
208 |
Q |
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| T |
325168 |
taaagggcaatctggagtacactttcttctttgatatttgcaggctgcacaagccttgtttattctgtgaatatccattagtaggagtaaaagggttatt |
325267 |
T |
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| Q |
209 |
accgtcaaaagaatcaaaaaggagaaagaaagggtttcagaatgtgaacatgtttaagagagaaggtctataaatttgaaatgaggagaaatattcaaga |
308 |
Q |
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| T |
325268 |
actgtcaaaagaatcaaaaaggagaaagaaagggtttcagaatgtgaacatgtttaagagagagcgtctataaatttgaaatgaggagaaatattcaaga |
325367 |
T |
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| Q |
309 |
ttcagttaaatacatagaaatattgattaatgagttagttaccacttcct |
358 |
Q |
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| T |
325368 |
ttcagttaaatacatagaaatattgattaatgagttagttaccacttcct |
325417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 3080734 - 3080865
Alignment:
| Q |
38 |
atgttggaaataccaaacaaacgatgtgcattggcaagcatttttggtttatcggctggaaaatacggagctaaagggcaatctggagtacactttcttc |
137 |
Q |
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| T |
3080734 |
atgtttgaaacaccaaacaaacgatgagcattgccgaacatctttggttcatcggccggaaaataaggagctaaaacacactctctagtgcactttcttc |
3080833 |
T |
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| Q |
138 |
tttgatatttgcaggctgcacaagccttgttt |
169 |
Q |
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| T |
3080834 |
tttgatacttgcatgctgcacaagccttgttt |
3080865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 169
Target Start/End: Complemental strand, 3104374 - 3104236
Alignment:
| Q |
31 |
cttcaccatgttggaaataccaaacaaacgatgtgcattggcaagcatttttggtttatcggctggaaaatacggagctaaagggcaatctggagtacac |
130 |
Q |
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|||||| |||||||||| |||||||||| || ||||| ||| | ||||||||||||| | |||||| || ||||||||||| |||||| | |||| |
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| T |
3104374 |
cttcactatgttggaaacaccaaacaaattgtgaacattgtcaaacctttttggtttatcagttggaaagtaaggagctaaaggacaatctttgggacac |
3104275 |
T |
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| Q |
131 |
tttcttctttgatatttgcaggctgcacaagccttgttt |
169 |
Q |
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| T |
3104274 |
tttctcctttgatacttgcatgctgcacaaactttgttt |
3104236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 3094054 - 3094182
Alignment:
| Q |
38 |
atgttggaaataccaaacaaacgatgtgcattggcaagcatttttggtttatcggctggaaaatacggagctaaagggcaatctggagtacactttcttc |
137 |
Q |
| |
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|||||||||| ||| ||||||||||| || ||| | | || || ||||||||| || |||||||| ||||||| | | |||||| | ||||||||||| |
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| T |
3094054 |
atgttggaaacaccgaacaaacgatgagcgttgccgaacacttgtggtttatcagcaggaaaataaggagctagaagacaatcttttgaacactttcttc |
3094153 |
T |
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| Q |
138 |
tttgatatttgcaggctgcacaagccttg |
166 |
Q |
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|||| ||||||| | ||||||||||||| |
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| T |
3094154 |
tttggaatttgcaagatgcacaagccttg |
3094182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 41122096 - 41121945
Alignment:
| Q |
9 |
catcatcaatagactttagcgtcttcaccatgttggaaataccaaacaaacgatgtgcattggcaagcatttttggtttatcggctggaaaatacggagc |
108 |
Q |
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||||||||||| ||||||| |||||||||||||||||| ||||||||||||||| || ||| | |||| ||||||||||||||||||||| ||||| |
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| T |
41122096 |
catcatcaatattctttagcatcttcaccatgttggaaacaccaaacaaacgatgagccttgtagaagatttctggtttatcggctggaaaataaggagc |
41121997 |
T |
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| Q |
109 |
taaagggcaatctggagtacactttcttctttgatatttgcaggctgcacaa |
160 |
Q |
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|||| |||| ||||| |||||||||||||||||||||||| ||||||||| |
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| T |
41121996 |
taaatcgcaacttggagaacactttcttctttgatatttgcatgctgcacaa |
41121945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 38 - 169
Target Start/End: Complemental strand, 36915126 - 36914995
Alignment:
| Q |
38 |
atgttggaaataccaaacaaacgatgtgcattggcaagcatttttggtttatcggctggaaaatacggagctaaagggcaatctggagtacactttcttc |
137 |
Q |
| |
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|||||||||| ||||||||||||||| || ||| | |||||||||||||||||| || ||||| ||||||||||| || || | ||||||||||| |
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| T |
36915126 |
atgttggaaacaccaaacaaacgatgagcgttgctgaacatttttggtttatcggccgggaaataaggagctaaaggacactcacttgaacactttcttc |
36915027 |
T |
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| Q |
138 |
tttgatatttgcaggctgcacaagccttgttt |
169 |
Q |
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||||||| ||||| |||||||||||||||||| |
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| T |
36915026 |
tttgatacttgcatgctgcacaagccttgttt |
36914995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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