View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19583_high_30 (Length: 326)

Name: NF19583_high_30
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19583_high_30
NF19583_high_30
[»] chr5 (3 HSPs)
chr5 (196-308)||(12633840-12633952)
chr5 (1-92)||(12633560-12633651)
chr5 (128-197)||(12633686-12633755)
[»] chr7 (3 HSPs)
chr7 (196-303)||(37960698-37960805)
chr7 (1-92)||(37960988-37961079)
chr7 (128-197)||(37960883-37960952)
[»] chr8 (2 HSPs)
chr8 (1-91)||(31151212-31151300)
chr8 (269-308)||(17231554-17231593)
[»] chr2 (1 HSPs)
chr2 (269-308)||(28050276-28050315)
[»] chr1 (1 HSPs)
chr1 (269-308)||(19851970-19852009)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 12633840 - 12633952
Alignment:
Q  196 aataatgagaattttcctggttctgatgcgtaaacatttggaggccaaggtgatcaagggttgtcagcaaaattcccatgagtttctcctctctcttgtt 295  Q
    |||||||| ||||||||| ||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12633840 aataatgataattttcctagttttgatgcataaacatttggaggccaaggtaatcaagggttgtcagcaaaattcccatgagtttctcctctctcttgtt 12633939  T
Q  296 cttgtctaacccc 308  Q
    |||||||||||||    
T  12633940 cttgtctaacccc 12633952  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 12633560 - 12633651
Alignment:
Q  1 gttaaatttatgatttgcacaagtaattcagcttctcttttggatctatttccttcatagtgccagcttgagaaccactttttccactgatc 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||| |||||||||    
T  12633560 gttaaatttatgatttgcacaagtaattcagcttctcttttggatttgtttccttcatagtgccagcttgagaaccacctttgccactgatc 12633651  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 12633686 - 12633755
Alignment:
Q  128 taaagttcttctcatttgccgttcttttacatgtttcgtttaactgaaacttggctctaactgtgttcaa 197  Q
    |||||||||||  ||||| | |||||||||||||||| |||||||||||||||||||||  |||||||||    
T  12633686 taaagttcttcctatttgtcattcttttacatgtttcatttaactgaaacttggctctagttgtgttcaa 12633755  T

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Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 196 - 303
Target Start/End: Complemental strand, 37960805 - 37960698
Alignment:
Q  196 aataatgagaattttcctggttctgatgcgtaaacatttggaggccaaggtgatcaagggttgtcagcaaaattcccatgagtttctcctctctcttgtt 295  Q
    ||||||||||||||||||||||||||| | |||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37960805 aataatgagaattttcctggttctgattcctaaacatttggaggtcaaggtcatcaagggttgtcagcaaaatccccatgagtttctcctctctcttgtt 37960706  T
Q  296 cttgtcta 303  Q
    ||||||||    
T  37960705 cttgtcta 37960698  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 37961079 - 37960988
Alignment:
Q  1 gttaaatttatgatttgcacaagtaattcagcttctcttttggatctatttccttcatagtgccagcttgagaaccactttttccactgatc 92  Q
    |||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| |  ||||||||| |||||| ||| |||||||||    
T  37961079 gttaaatttatgatttgcacaagtaatttagcttctcttttggatttgtttccttcattgacccagcttgaaaaccacctttgccactgatc 37960988  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 37960952 - 37960883
Alignment:
Q  128 taaagttcttctcatttgccgttcttttacatgtttcgtttaactgaaacttggctctaactgtgttcaa 197  Q
    ||||||||||   ||||||| |||||||||||||||| ||||||||||||||||||||| | ||||||||    
T  37960952 taaagttctttctatttgccattcttttacatgtttcatttaactgaaacttggctctagcagtgttcaa 37960883  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 31151212 - 31151300
Alignment:
Q  1 gttaaatttatgatttgcacaagtaattcagcttctcttttggatctatttccttcatagtgccagcttgagaaccactttttccactgat 91  Q
    |||||||||||||||| |||||||||||||||||||||||||||| | |||||||||| ||||||  ||||||||||| ||| ||||||||    
T  31151212 gttaaatttatgatttccacaagtaattcagcttctcttttggatttgtttccttcatcgtgcca--ttgagaaccacctttgccactgat 31151300  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 17231593 - 17231554
Alignment:
Q  269 tcccatgagtttctcctctctcttgttcttgtctaacccc 308  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  17231593 tcccatgagtttttcctctctcttgttctcgtctaacccc 17231554  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 28050315 - 28050276
Alignment:
Q  269 tcccatgagtttctcctctctcttgttcttgtctaacccc 308  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  28050315 tcccatgagtttttcctctctcttgttctcgtctaacccc 28050276  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 19852009 - 19851970
Alignment:
Q  269 tcccatgagtttctcctctctcttgttcttgtctaacccc 308  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  19852009 tcccatgagtttttcctctctcttgttctcgtctaacccc 19851970  T

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