View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_high_31 (Length: 322)
Name: NF19583_high_31
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_high_31 |
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| [»] scaffold0300 (1 HSPs) |
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Alignment Details
Target: scaffold0300 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 3035 - 2729
Alignment:
| Q |
16 |
caaacaaaaggaacttctaaattgagaactatgtacacattatggtccacattagatgaactgcttaaaaccaaaatcaacgatagaattgaaaataatg |
115 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| || |||||||| ||||||||||||||||||||||||||||| |
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| T |
3035 |
caaacaaaaggaacttctaaattgacaactatgtacacattatggtcaacattagatggaccgcttaaaatcaaaatcaacgatagaattgaaaataatg |
2936 |
T |
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| Q |
116 |
atgacggtagttctttgttgagactcctaaggcttatccccaatcaaccggtggaaatgccaacatctttgttgagaatgttcatgtcattttataactc |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2935 |
atgagagtagttctttgttgagactcctaaggcttatccccaatcaaccggtggaaatgacaacatctttgttgagaatgttcatgtcattttataactc |
2836 |
T |
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| Q |
216 |
tatggaaaatgtttcttattttcgagtttgtgttcaaaacatgaacgtcacattggaggacgttttgtttttgactcatttgcctattacagaccgaaca |
315 |
Q |
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| T |
2835 |
tatagaaaatgtttcttattttcgggtctgtagtcaaaacatgaacgtcacattggaagacgttttgtttttgacccatttgcctattacagaccgacca |
2736 |
T |
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| Q |
316 |
attgtcc |
322 |
Q |
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| T |
2735 |
attgtcc |
2729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 24679092 - 24679382
Alignment:
| Q |
17 |
aaacaaaaggaacttctaaattgagaactatgtacacattatggtccacattagatgaactgcttaaaaccaaaatcaacgatagaattgaaaataatga |
116 |
Q |
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| T |
24679092 |
aaacaaaaggaacttctaaattgacaactatgtacacattatggtcaacattagatgaaccgtttaaaaccaaaatcaacgatagaattgaaaataatga |
24679191 |
T |
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| Q |
117 |
tgacggtagttctttgttgagactcctaaggcttatccccaatcaaccggtggaaatgccaacatctttgttgagaatgttcatgtcattttataactct |
216 |
Q |
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| T |
24679192 |
tgagggtagttctttgttgagactcctaaggcttatccccaatcaaccggtggaaataccaacatctttattaagaatgttcatgtaattttataactat |
24679291 |
T |
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| Q |
217 |
atggaaaatgtttcttattttcgagtttgtgttcaaaacatgaacgtcacattggaggacgttttgtttttgactcatttgcctattacag |
307 |
Q |
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| T |
24679292 |
atagaaaatgtttcttattttcgagtcagtggtcaaaacatgaacgtcgcattggaggatgttttgtttttgacacatttgcctactacag |
24679382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 25341532 - 25341313
Alignment:
| Q |
20 |
caaaaggaacttctaaattgagaactatgtacacattatggtccacattagatgaactgcttaaaaccaaaatcaacgatagaattgaaaataatgatga |
119 |
Q |
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||||| ||||||||||||||| |||| || ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| | ||||||||| | |
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| T |
25341532 |
caaaatgaacttctaaattgacaactttgaacacattatggtcagaattagatgaaccgcttaaaaccaaaatcaacgatataatttataataatgataa |
25341433 |
T |
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| Q |
120 |
cggtagttctttgttgagactcctaaggcttatccccaatcaaccggtggaaatgccaacatctttgttgagaatgttcatgtcattttataactctatg |
219 |
Q |
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| T |
25341432 |
gggtagttctttgttgagactcctaaggcttatgcccaataaaccagtggaattgcaaacatctttgttgaaaactttcatgtcatattataacattgat |
25341333 |
T |
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| Q |
220 |
gaaaatgtttcttattttcg |
239 |
Q |
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| T |
25341332 |
gaaaatgtttcttattttcg |
25341313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 25346015 - 25345796
Alignment:
| Q |
20 |
caaaaggaacttctaaattgagaactatgtacacattatggtccacattagatgaactgcttaaaaccaaaatcaacgatagaattgaaaataatgatga |
119 |
Q |
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||||| ||||||||||||||| |||| || ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| | ||||||||| | |
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| T |
25346015 |
caaaatgaacttctaaattgacaactttgaacacattatggtcagaattagatgaaccgcttaaaaccaaaatcaacgatataatttataataatgataa |
25345916 |
T |
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| Q |
120 |
cggtagttctttgttgagactcctaaggcttatccccaatcaaccggtggaaatgccaacatctttgttgagaatgttcatgtcattttataactctatg |
219 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||| |||||| ||| |||||||||||||| || |||||||||| ||||||| | |
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| T |
25345915 |
gggtagttctttgttgagactcctaaggcttatgcccaataaaccagtggaattgcaaacatctttgttgaaaactttcatgtcatattataacattgat |
25345816 |
T |
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| Q |
220 |
gaaaatgtttcttattttcg |
239 |
Q |
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| T |
25345815 |
gaaaatgtttcttattttcg |
25345796 |
T |
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