View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_high_40 (Length: 292)
Name: NF19583_high_40
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 27781642 - 27781374
Alignment:
| Q |
18 |
aattccaccatgttgaactacacatttcttcctccatgaaaacatgagttccgatctttttcataaactaaatatagtccaacagaaataaatgaatatg |
117 |
Q |
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| T |
27781642 |
aattccaccatgttgaactacacatttcttcctccatgaaaacatgagttccgatctttttcataaactaaatatagtccaacagaaataaatgaatatg |
27781543 |
T |
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| Q |
118 |
ctcacttacaaacttatttgctataatgtcatcaaattgtcatgacttaactaagactcaaacctta---tcatattcatcattgactgcagagtctccg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||| |
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| T |
27781542 |
ctcacttacaaacttatttgctataatgtcatcaaattgtcatgacttaactaagactcgaaccttatcatcatattcatcgttgactgcagagtctccg |
27781443 |
T |
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| Q |
215 |
gtctcgctgttggtttcactaagaagttcatcactagcatctacatctgacccctctattgattcatct |
283 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27781442 |
gtctcgctgttggtttcactaacaagttcatcactagcatctacatctgacccctctattgattcatct |
27781374 |
T |
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