View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_high_48 (Length: 265)
Name: NF19583_high_48
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_high_48 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 28 - 265
Target Start/End: Complemental strand, 46002678 - 46002441
Alignment:
| Q |
28 |
tgaaaatggagacaactttcacttgtgttttttattcacgtttgagttagtttacttaatttttccataaaaaacaagatgagcttacttagaag--nnn |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |
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| T |
46002678 |
tgaaaatggagacaactttcacttgtgttttttattcacgtttgagttagtttacttaatttttccaaaaaaaagaagattagcttacttagaagaaaaa |
46002579 |
T |
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| Q |
126 |
nnnnntgtatatataggttaactactgacttttnnnnnnnnnnnnnnntaatcttactatcattgttttacaaatcagacaattgacctaactagtttgt |
225 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46002578 |
aaaaatgtatatataggttaactactgacttttaaaaaaaaataaaa--aatcttagtatcattgttttacaaatcggacaattgacctaactagtttgt |
46002481 |
T |
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| Q |
226 |
cgatagattggatttcgattatactgtcggatggttgcac |
265 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
46002480 |
cgattgattggatttcgattatactgtcggatggttgcac |
46002441 |
T |
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