View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_high_49 (Length: 256)
Name: NF19583_high_49
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 9455758 - 9455988
Alignment:
| Q |
13 |
atcaataataatttgataaaa-ttcagtgtgtcttgtgtccatgttggacataggaacataccttttatcagaagtgttggtgataactactaacctgta |
111 |
Q |
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| T |
9455758 |
atcaataataatttgataaaaattcagcgtgtctggtgtcgatgttggacataggaatatacctttgatcagaagtgttggtgataactactaacctgta |
9455857 |
T |
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| Q |
112 |
tcgtaaccgaataaaaggccaccaataccagctgataaagcaagacgcatgagatacggtgattcggttgttcttcgccaacattctgtgaactctgttt |
211 |
Q |
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| T |
9455858 |
tcgtaaccaaataaaagaccaccaataccagctgataaagcaagacgcatgagatacggtgattcggttgttcttcgccaacattctgtgaactctgttt |
9455957 |
T |
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| Q |
212 |
tgtctgctaattgatgaccaccttcggccat |
242 |
Q |
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| T |
9455958 |
tgtctgctaattgatgaccaccttcggccat |
9455988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 148 - 242
Target Start/End: Original strand, 9444183 - 9444277
Alignment:
| Q |
148 |
aaagcaagacgcatgagatacggtgattcggttgttcttcgccaacattctgtgaactctgttttgtctgctaattgatgaccaccttcggccat |
242 |
Q |
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||||||||||||||||| || |||||||| | |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || ||||| |
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| T |
9444183 |
aaagcaagacgcatgaggtaaggtgattcagctgttcttcgccaacattctgtgaactctgtcttgtctgctaatggatgaccaccctcagccat |
9444277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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