View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_high_57 (Length: 224)
Name: NF19583_high_57
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_high_57 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 3221039 - 3221232
Alignment:
| Q |
19 |
aaaccagctgcgtaactcagttgaaccgcaggtaaaacatgagcagtagcagaagtgctgaaaccaagtgtttctgaatttgcaaggatcatagcaacac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3221039 |
aaaccagctgcgtaactcagttgaaccgcaggtaaaacatgagcagtagcagaagtgctgaaaccaagtgtttctgaatttgcaaggatcatagcaacac |
3221138 |
T |
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| Q |
119 |
cgcctgaatttagaacttcttgtcctttcacaatagttgaaacacgtcctccgacatcacacaacactacttttccacttagatcaatattctt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
3221139 |
cgcctgaatttagaacttcttgtcctttcacaatagttgaaacacgtcctccgacatcacacaccactacttttccacttagatcaatgttctt |
3221232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 3231272 - 3231465
Alignment:
| Q |
19 |
aaaccagctgcgtaactcagttgaaccgcaggtaaaacatgagcagtagcagaagtgctgaaaccaagtgtttctgaatttgcaaggatcatagcaacac |
118 |
Q |
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||||||||| |||||||| || ||||||||||| |||||||||||||||| |||||||||||||| ||||||| ||| |||| |||| || |||| |
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| T |
3231272 |
aaaccagctttgtaactcacttcaaccgcaggtagaacatgagcagtagcaaaagtgctgaaaccatcactttctgagtttacaagaatcactgctacac |
3231371 |
T |
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| Q |
119 |
cgcctgaatttagaacttcttgtcctttcacaatagttgaaacacgtcctccgacatcacacaacactacttttccacttagatcaatattctt |
212 |
Q |
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| T |
3231372 |
cacctgaatttaaaacttcttgtcctttcacagtgcttggaacacgtcctccgatatcacacaacactacttttccacttagatcgatgttctt |
3231465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 3226024 - 3226214
Alignment:
| Q |
19 |
aaaccagctgcgtaactcagttgaaccgcaggtaaaacatgagcagtagcagaagtgctgaaaccaagtgtttctgaatttgcaaggatcatagcaacac |
118 |
Q |
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||||||||||| ||||||| || ||| ||||||| |||||||||| ||||| |||| ||||||||||||| ||||||||||||||| ||||| || | || |
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| T |
3226024 |
aaaccagctgcataactcacttcaactgcaggtagaacatgagcaatagcaaaagtactgaaaccaagtgcttctgaatttgcaagtatcattgctatac |
3226123 |
T |
|
| Q |
119 |
cgcctgaatttagaacttcttgtcctttcacaatagttgaaacacgtcctccgacatcacacaacactacttttccacttagatcaatattctt |
212 |
Q |
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| ||||||||||||||||||||||||||||||||| |||| ||| |||| |||||||||| |||||||||||| |||| |||||| ||||| |
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| T |
3226124 |
cacctgaatttagaacttcttgtcctttcacaatacttgagacatttcct---acatcacacagcactacttttccgcttaaatcaatgttctt |
3226214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 3240071 - 3240264
Alignment:
| Q |
19 |
aaaccagctgcgtaactcagttgaaccgcaggtaaaacatgagcagtagcagaagtgctgaaaccaagtgtttctgaatttgcaaggatcatagcaacac |
118 |
Q |
| |
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||||||||||| ||||||| || ||| || || | |||||||||||||||| |||||||||||||| ||||||| ||| |||| |||| || |||| |
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| T |
3240071 |
aaaccagctgcataactcacttcaactgctggcagaacatgagcagtagcaaaagtgctgaaaccatcactttctgagtttacaagaatcactgctacac |
3240170 |
T |
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| Q |
119 |
cgcctgaatttagaacttcttgtcctttcacaatagttgaaacacgtcctccgacatcacacaacactacttttccacttagatcaatattctt |
212 |
Q |
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| || |||||||||||||||||||||||||| ||||||||| | | || | |||||||||||| |||||||||||||||||||||||||| |
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| T |
3240171 |
catttgcatttagaacttcttgtcctttcacaaaggttgaaacatcttcacctatatcacacaacacaacttttccacttagatcaatattctt |
3240264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 3178769 - 3178576
Alignment:
| Q |
19 |
aaaccagctgcgtaactcagttgaaccgcaggtaaaacatgagcagtagcagaagtgctgaaaccaagtgtttctgaatttgcaaggatcatagcaacac |
118 |
Q |
| |
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||||||||||| ||||| | || ||| || || | |||||||||||||||| |||||||||||||| ||||||| ||| |||| |||| || |||| |
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| T |
3178769 |
aaaccagctgcataacttacttcaactgctggcagaacatgagcagtagcaaaagtgctgaaaccatcactttctgagtttacaagaatcactgctacac |
3178670 |
T |
|
| Q |
119 |
cgcctgaatttagaacttcttgtcctttcacaatagttgaaacacgtcctccgacatcacacaacactacttttccacttagatcaatattctt |
212 |
Q |
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| || |||||||||||||||||||||||||| ||||||||| | | || | |||||||||||| |||||||||||||||||||||||||| |
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| T |
3178669 |
catttgcatttagaacttcttgtcctttcacaaaggttgaaacatcttcacctatatcacacaacacaacttttccacttagatcaatattctt |
3178576 |
T |
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