View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19583_high_6 (Length: 568)
Name: NF19583_high_6
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 148 - 558
Target Start/End: Complemental strand, 42992330 - 42991922
Alignment:
| Q |
148 |
tttgtaagcatatacatacaattggatttgtttcaatttttcgtccttccaaatatatatatagattgcttggaatgaggctctatgaattgttgattat |
247 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42992330 |
tttgtaagcatacacatacaattggatttgtttcaatttttcgtccttccaaatatatata--gattgcttggaataaggctctatgaattgttgattat |
42992233 |
T |
|
| Q |
248 |
ttgtgattccaatttaatttcaaattaaaattcttgtgttttatatcaaaagaatactttggttttgaaaattcgtgatcagattcaatttggcattcgg |
347 |
Q |
| |
|
|||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42992232 |
ttgtgacttcaatttaattttaaattaaaattcttgtgttttatatcaaaagaatactttggttttgaaaattcgtgatcagattcaatttggcattcgg |
42992133 |
T |
|
| Q |
348 |
ttagtattcaaatcaagaagttattgaattcacttaatttagctattcaagttttttattttggtttatgaaactgttgtactttgtgaatttggttttc |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42992132 |
ttagtattcaaatcaagaagttattgaattcacttaatttagctattcaagtgttttattttggtttatgaaactgttgtactttgtgaatttggttttc |
42992033 |
T |
|
| Q |
448 |
caaaagcctttaaaccgttatgcaaccagtatattcattttggttgaaaaatttctcgttggtgctaaattttatctcaagtacttataatatttggcta |
547 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42992032 |
caaaagcctttaaaccgttatgcaactagtatattcatttaggttgaaaaatttctcgttggtgctaaattttatctcaagtacttataatatttggcta |
42991933 |
T |
|
| Q |
548 |
cttgttttcat |
558 |
Q |
| |
|
||||||||||| |
|
|
| T |
42991932 |
cttgttttcat |
42991922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 42992463 - 42992378
Alignment:
| Q |
18 |
gcaattcggtttacgataaactaaaatttagtttattctgttcggtttttcaattttagttcttcttctgaaatttgacaatataa |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42992463 |
gcaattcggtttacgataaactaaaatttagtttattctgttcggtttttcaattttagttcttcttttgaaatttgacaatataa |
42992378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University