View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_high_8 (Length: 548)
Name: NF19583_high_8
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 16 - 529
Target Start/End: Original strand, 47550828 - 47551343
Alignment:
| Q |
16 |
atcgaaataatttcttttttcaaccaacttttaataatccaatgtccagtcatgatatgagaggagacaataatgggttgggaggcattatttcttcagt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47550828 |
atcgaaataatttcttttttcaaccaacttttaataatccaatgtccagtcatgatatgagaggagacaataatgggttgggaggcattatttcttcagt |
47550927 |
T |
|
| Q |
116 |
tgaaagtgtgcagaagaacaccgcagcaggatggaacaagataggaacaacaaattccctgccgcggcgggtggatagctttgatcatcaactggattct |
215 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47550928 |
tgaaagtgtgcagaagaacaccgcagcaggatcgaacaagatagaaacaacaaattccctgcc---gcgggtggatagctttgatcatcaactggattct |
47551024 |
T |
|
| Q |
216 |
ttttgtcgtgatgcaatgctgaagaagaaaagtgatagaacaatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttct----t |
311 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
47551025 |
ttttgtggtgatgcaatgctgaagaagacaagtgatagaacaatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttctttcct |
47551124 |
T |
|
| Q |
312 |
atttgaaagttaaggccccttgttaatttgtttaactgggaaaattcatgagttaggaattagggtagcagatcaaataggcgttagtggtaactcattc |
411 |
Q |
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| T |
47551125 |
atttgaaagttaagg-cccttgttaatttgtttaactgggaaacttcatgagttaggaattagggtagcagatcaaataggcgttagtggtaactcattc |
47551223 |
T |
|
| Q |
412 |
tttcagatgcatgtttgaaacatatattgttgacatggttggtaaattgtttttatgtttcttaatattgat--agaatgctttgattaatcaatggctg |
509 |
Q |
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| T |
47551224 |
tttcagatgcatgtttggaacatatattgttgacttggttggtaaattgtttttatgtttcttaatattgattgagaatgctttgattaatcaatggctg |
47551323 |
T |
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| Q |
510 |
atgtgtaacttagatattat |
529 |
Q |
| |
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|||||||||||||||||||| |
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| T |
47551324 |
atgtgtaacttagatattat |
47551343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 223 - 526
Target Start/End: Original strand, 47538259 - 47538571
Alignment:
| Q |
223 |
gtgatgcaatgctgaagaagaaaagtgatagaacaatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttct----tatttgaa |
318 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47538259 |
gtgatgcaatgctaaagaagacaagtgatagaacaatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttctttcctatttgaa |
47538358 |
T |
|
| Q |
319 |
agttaaggccc---cttgttaatttgtttaactgggaaaattcatgagttaggaattagggtagc--agatcaaataggcgttagtggtaactcattctt |
413 |
Q |
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| T |
47538359 |
agttaaggccctttcttgttaattcgtttaactgggaaaatttatgagataagaattagggtagcatagatcaaataggccttagtggtaactcattctt |
47538458 |
T |
|
| Q |
414 |
tcagatgcatgtttgaaacatatattgttgacatggttggtaaattgtttttatgtttcttaatattgat--aga--atgctttgattaatcaatggctg |
509 |
Q |
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|||| |||||| || |||||||||||||||| |||||||||||||||||||||||| ||||||||| ||| || ||||||||||||||||||| |
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| T |
47538459 |
ccagaagcatgtctggaacatatattgttgac----ttggtaaattgtttttatgtttctcaatattgattcagactgtgttttgattaatcaatggctg |
47538554 |
T |
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| Q |
510 |
atgtgtaacttagatat |
526 |
Q |
| |
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||||||||||||||||| |
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| T |
47538555 |
atgtgtaacttagatat |
47538571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 237 - 526
Target Start/End: Original strand, 47544830 - 47545128
Alignment:
| Q |
237 |
aagaagaaaagtgatagaacaatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttct----tatttgaaagttaaggccc--- |
329 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47544830 |
aagaagacaagtgatagaacaatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttctttcctatttgaaagttaaggcccttt |
47544929 |
T |
|
| Q |
330 |
cttgttaatttgtttaactgggaaaattcatgagttaggaattagggtagc--agatcaaataggcgttagtggtaactcattctttcagatgcatgttt |
427 |
Q |
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| T |
47544930 |
cttgttaattcgtttaactgggaaaatttatgagataagaattagggtagcatagatcaaataggccttagtggtaactcattcttccagaagcatgtct |
47545029 |
T |
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| Q |
428 |
gaaacatatattgttgacatggttggtaaattgtttttatgtttcttaatattgat--aga--atgctttgattaatcaatggctgatgtgtaacttaga |
523 |
Q |
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| T |
47545030 |
ggaacatatattgttgac----ttggtaaattgtttttatgtttctcaatattgattcagactgtgttttgattaatcaatggctgatgtgtaacttaga |
47545125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 57 - 328
Target Start/End: Original strand, 47529011 - 47529275
Alignment:
| Q |
57 |
atgtccagtcatgatatgagaggagacaataatgggttgggaggcattatttcttcagttgaaagtgtgcagaagaacaccgcagcaggatggaacaaga |
156 |
Q |
| |
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||||||||||||||||||||||||| ||||||| | | |||| ||||||||||||||| |||||||| || |||||||| ||||||| ||||||||| |
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| T |
47529011 |
atgtccagtcatgatatgagaggagccaataatagatcgggaagcattatttcttcagctgaaagtgggc---agaacaccccagcaggtgggaacaaga |
47529107 |
T |
|
| Q |
157 |
taggaacaacaaattccctgccgcggcgggtggatagctttgatcatcaactggattctttttgtcgtgatgcaatgctgaagaagaaaagtgatagaac |
256 |
Q |
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| T |
47529108 |
taggacgaacaaattccctgcc---acgggtggctagcttggaacatcttc-agagtcgaat--tcgtggtg--gtgccgaagaagacaagtgatagaat |
47529199 |
T |
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| Q |
257 |
aatttgattacatgatgttttcatgaacacattgttctgaaacaatacttttct----tatttgaaagttaaggcc |
328 |
Q |
| |
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||||||||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |
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| T |
47529200 |
aatttgattacataatgttttcatgaacacattgttttgagacaatacttttctttcctatttgaaagttaaggcc |
47529275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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