View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_high_9 (Length: 545)
Name: NF19583_high_9
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_high_9 |
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| [»] scaffold0810 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 149 - 535
Target Start/End: Complemental strand, 54181678 - 54181292
Alignment:
| Q |
149 |
tatcaaacaacttgagctttatttctaaagctcttatttttaattttaaagtgattttttgtgccaaaacaaatcaagccaaacaaagtctaaaagttgt |
248 |
Q |
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| T |
54181678 |
tatcaaacaacttgagctttatttctaaagctcttatttttaattttaaagtgatttttagtgccaaaacaaatcaagtcaaacaaagtctaaaagttgt |
54181579 |
T |
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| Q |
249 |
gtttgtgcagaggcttctggatgcttcacacagagacttgagaagagccagggctgcagcactgaacattgtccccaccagcacaggagcagccaaggct |
348 |
Q |
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| T |
54181578 |
gtttgtgcagaggcttctggatgcttcacacagagacttgagaagagccagggctgcagcactgaacattgtccccaccagcacaggagcagccaaggct |
54181479 |
T |
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| Q |
349 |
gtctctctagtgctgccacagctcaagggaaagctcaatggaatcgcccttcgtgtgccaacacctaatgtttcagttgttgaccttgtggtgaatgttg |
448 |
Q |
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| T |
54181478 |
gtctctctagtgctgccacagctcaagggaaagctcaacggaatcgcccttcgtgtgccaacacctaatgtttcagttgttgaccttgtggtgaatgttg |
54181379 |
T |
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| Q |
449 |
cgaagaagggtatttcagctgaagatgtcaatgcagcattcagaaaggcagctgagggaccactgaaaggtgttttggatgtctgtg |
535 |
Q |
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| T |
54181378 |
cgaagaagggtatttcagccgaagatgtcaatgcagcattcagaaaggcagctgagggaccactgaaaggtgttttggatgtctgtg |
54181292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 54181805 - 54181716
Alignment:
| Q |
17 |
agaaactatatatgagtaacttttcaagtgggagaactttgataatttgatctgttttattattatttaacccaaattctattattctct |
106 |
Q |
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| T |
54181805 |
agaaactatatatgagtaacttttcaagtgggagaactttgataatttgatctgttttattattatttaacccaaattctattattctct |
54181716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 11423295 - 11423254
Alignment:
| Q |
149 |
tatcaaacaacttgagctttatttctaaagctcttattttta |
190 |
Q |
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| T |
11423295 |
tatcaaacaactttagctttatttctaaagctctaattttta |
11423254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 32160608 - 32160654
Alignment:
| Q |
151 |
tcaaacaacttgagctttatttctaaagctcttatttttaattttaa |
197 |
Q |
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| T |
32160608 |
tcaaacaactttaactttatttttaaacctcttatttttaattttaa |
32160654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0810 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0810
Description:
Target: scaffold0810; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 4671 - 4716
Alignment:
| Q |
152 |
caaacaacttgagctttatttctaaagctcttatttttaattttaa |
197 |
Q |
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| T |
4671 |
caaacaactttagctttacttctaaagcacttatttttaactttaa |
4716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 24725083 - 24725128
Alignment:
| Q |
152 |
caaacaacttgagctttatttctaaagctcttatttttaattttaa |
197 |
Q |
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| T |
24725083 |
caaacaactttagctttaattctaaagcacttatttttaactttaa |
24725128 |
T |
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