View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_low_11 (Length: 520)
Name: NF19583_low_11
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 428358 - 428076
Alignment:
| Q |
17 |
cattgcaagcaatgcatgttaattaatatatttcctctattttgccttggcacatgccttcgtgttgaagcggctatgcaaacatccgtcagttcaacca |
116 |
Q |
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| T |
428358 |
cattgcaagcaatgcatgttaattaatatatttcctctattttgcattggcacatgccttcgtgttgaagcggctatgcaaacatccgtcagttcaacca |
428259 |
T |
|
| Q |
117 |
ggtaccgcttctatttagcttgattattttttattttgtttattcttggttatttatgaatcatccttcttaagatgagatatcatgatgaatagaattt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
428258 |
ggtaccgcttctatttagcttgattattttttattttgtttattcttggttatttatgaatcatccttcttaagatgagatatcatgataaatagaattt |
428159 |
T |
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| Q |
217 |
cataattgtatccttttgttgcattgtctgttgatctggattgatcttaatcaaatcgtatttacatattatgcttatttgtt |
299 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
428158 |
cataattgtatccttttgttgcattttctgttgatctggattgatcttaatcaaatcgtatttacatattatgcttatttgtt |
428076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 274 - 507
Target Start/End: Complemental strand, 428068 - 427836
Alignment:
| Q |
274 |
gtatttacatattatgcttatttgtttatctggattgatcttaattgctcaaaatcttaggattcttgacaccaactagttctagacttgtagttgattt |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
428068 |
gtatttacatattatgcttatttgtttatctggattgatcttaattgctcaaaatcttaggattcttgacaccaactagttctacacttgtagttgattt |
427969 |
T |
|
| Q |
374 |
atgagaattttctgtgctaaaaatcactattatgttgcttctgaattgtgatggacttgtggtgcattacattggtattgtttttatgcattacgtgtgc |
473 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
427968 |
atgagaattttctgtac-aaaaatcactattatgttgcttctgaattgtgatggacttgtggtgcattacattggtgttgtttttatgcattacgtgtgc |
427870 |
T |
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| Q |
474 |
attctttaatctattttccaccttcctttctcca |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
427869 |
attctttaatctattttccaccttcctttctcca |
427836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 2e-69; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 279 - 507
Target Start/End: Complemental strand, 15564636 - 15564407
Alignment:
| Q |
279 |
tacatattatgcttatttgtttatctggattgatcttaattgctcaaaatcttaggattcttgacaccaactagttctagacttgtagttgatttatgag |
378 |
Q |
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|||||||||||||| |||||| || ||||| ||||||||||||| |||||||||||||||| || ||||||||||||| ||||||||| ||| ||||| |
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| T |
15564636 |
tacatattatgcttgtttgttgatttggatcgatcttaattgcttaaaatcttaggattctagaaaccaactagttcttcccttgtagttcattcatgag |
15564537 |
T |
|
| Q |
379 |
aattttctgtgctaaaaatcactattatgttgcttctgaattgtgatggacttgtggtgcattacattggtattgt-ttttatgcattacgtgtgcattc |
477 |
Q |
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|||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||| |
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| T |
15564536 |
aattttctgtactaaaaataactattatgttgcttgtgaattgtgatggacttgtggtgcattacattggtattgttttttgtgcattacatgtgcattc |
15564437 |
T |
|
| Q |
478 |
tttaatctattttccaccttcctttctcca |
507 |
Q |
| |
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|||| |||||| | |||||||||||||| |
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| T |
15564436 |
tttactctattcgacgccttcctttctcca |
15564407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 274 - 481
Target Start/End: Original strand, 18392838 - 18393045
Alignment:
| Q |
274 |
gtatttacatattatgcttatttgtttatctggattgatcttaattgctcaaaatcttaggattcttgacaccaactagttctagacttgtagttgattt |
373 |
Q |
| |
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|||| ||||| |||||||| |||||| || | ||| ||||||||||||| ||||||||||||||| | ||||||||||||| ||||||||| ||| |
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| T |
18392838 |
gtatctacatcttatgcttctttgttgatttagatcgatcttaattgctttaaatcttaggattctataaaccaactagttcttcccttgtagttccttt |
18392937 |
T |
|
| Q |
374 |
atgagaattttctgtgctaaaaatcactattatgttgcttctgaattgtgatggacttgtggtgcattacattggtattgtttttatgcattacgtgtgc |
473 |
Q |
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||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| |||||||| ||||| |
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| T |
18392938 |
atgggaattttctgtactaaaaatcactattatgttgcttgtgaattgtgatggacttttggtgccttacattggtattgtttttgtgcattacatgtgc |
18393037 |
T |
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| Q |
474 |
attcttta |
481 |
Q |
| |
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|||||||| |
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| T |
18393038 |
attcttta |
18393045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 18388275 - 18388342
Alignment:
| Q |
149 |
attttgtttattcttggttatttatgaatcatccttcttaagatgagatatcatgatgaatagaattt |
216 |
Q |
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||||||| |||| ||||||| | ||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
18388275 |
attttgtctatttttggttactgatgaatcatccttgttaagatgagatatcatgataaatagaattt |
18388342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 30643258 - 30643379
Alignment:
| Q |
39 |
ttaatatatttcctctattttgccttggcacatgccttcgtgttgaagcggctatgcaaacatccgtcagttcaaccaggtaccgcttctatttagcttg |
138 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| |||| |
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| T |
30643258 |
ttaatatatttcctctatttttccttggcactggccttcgtgttgaagcggcgatgcaaacatccgtcggttcaaccaggtaccgcttctttttaacttg |
30643357 |
T |
|
| Q |
139 |
attattttttattttgtttatt |
160 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
30643358 |
attattttttattttggttatt |
30643379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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