View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19583_low_13 (Length: 485)
Name: NF19583_low_13
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 16193361 - 16193798
Alignment:
| Q |
1 |
ctattactttgttcatgtcctatgttatgctttttgagctatgaacataagcttaaagtcatgatcttcatcactttttgtggacttaaaataaaggaca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16193361 |
ctattactttgttcatgtcctatattatgctttttgagctatgaacataaacttaaagtcatgatcttcatcactttttgtggacttaaaattaaggaca |
16193460 |
T |
|
| Q |
101 |
tggaaatgattgcaagggtagttttaccaaaattttacatggagaatcttaaccttaaggcttatgaggttttgtcttcagtagggtcaagagttttctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||| |||||||| |||||||||| ||||||||||| |
|
|
| T |
16193461 |
tggaaatgattgcaagggtagttttaccaaagttttacatggagaaccttaaccttaaagcttatcaggttttggtctcagtagggtgtagagttttctt |
16193560 |
T |
|
| Q |
201 |
cacttgtgtgcctagagttatggtggaagggtttcttaaggaatatttgaatggtgatgatgttattgccacagatttacacactgttggatgctacttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||| |
|
|
| T |
16193561 |
cacttgtgtgcctagagttatggtggaagggtttcttaaggaatatttgaatggtgatgatattgttgccacagagttacacactgttggatgctacttc |
16193660 |
T |
|
| Q |
301 |
actggtttgatttctaagcatggtttggttgataaggataattctctcatggattattttggatatagaagacctgatttaggaattggaagcacatgtg |
400 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16193661 |
actggtttgatttctaggcatggtttggttgataaggatagtgctctcattgattattttggatatagaagacctgatttaggaattggaagcacatgtg |
16193760 |
T |
|
| Q |
401 |
tcaatgatcatcattttatctctcattgtaaggtatat |
438 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16193761 |
tcaatgatcatcattttatctcttattgtaaggtatat |
16193798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 308
Target Start/End: Complemental strand, 39977041 - 39976823
Alignment:
| Q |
90 |
aataaaggacatggaaatgattgcaagggtagttttaccaaaattttacatggagaatcttaaccttaaggcttatgaggttttgtcttcagtagggtca |
189 |
Q |
| |
|
||||||||||||||||| || |||||| ||||||||||| ||||| | ||||||||||| ||| | | ||||||| || | |||||| ||||| |
|
|
| T |
39977041 |
aataaaggacatggaaaatgtttcaagggctgttttaccaaagttttatttagagaatcttaatcttcaagtttatgagattcttgcttcagctgggtct |
39976942 |
T |
|
| Q |
190 |
agagttttcttcacttgtgtgcctagagttatggtggaagggtttcttaaggaatatttgaatggtgatgatgttattgccacagatttacacactgttg |
289 |
Q |
| |
|
| |||| | |||| ||||||||||||||||||| ||||| ||| | || || ||||||| || | ||||||| | | |||||| ||||||||| ||| |
|
|
| T |
39976941 |
aaagttgttatcacaagtgtgcctagagttatggtagaaggatttttgaaagagtatttgagtgtcggtgatgttttaggcacagagttacacacttttg |
39976842 |
T |
|
| Q |
290 |
gatgctacttcactggttt |
308 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
39976841 |
gttgctacttcactggttt |
39976823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University