View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_low_15 (Length: 454)
Name: NF19583_low_15
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 230 - 422
Target Start/End: Original strand, 32941335 - 32941535
Alignment:
| Q |
230 |
attacaaaaaatatatatattttaacaagatgaaattacaactttcaaacatggcgtcattaggccgctcaacaacctaaaactcaactcagatgca-tt |
328 |
Q |
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| T |
32941335 |
attacaaaaaatatatatattttaacaagatgaaattacaactttcaaacatggcgtcattaggccgctcaacaacctaaaactcaactcagatgcattt |
32941434 |
T |
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| Q |
329 |
ttttaggcaaaaaccaaccatgtgcaatcaatttcattattcaactaccaccaat--------tcgaaaattttaaacgtgaaattattcgtcctcttca |
420 |
Q |
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| T |
32941435 |
ttttaggc-aaaaccaaccatgtgcaatcaatttcattattcaactaccaccaattctccaactccaaaattttaaacgtgaaattattcgtcctctcca |
32941533 |
T |
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| Q |
421 |
ag |
422 |
Q |
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|| |
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| T |
32941534 |
ag |
32941535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 32941174 - 32941278
Alignment:
| Q |
19 |
tttattgctaattactaaaccatctaatagctcacctcgttctttcctatttgtgaacatcacctacaataatccacgtagttaaagtcatatatacaat |
118 |
Q |
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| T |
32941174 |
tttattgctaattactaaaccatctaatagctcacctcgttctttcctatttgtgaacatcacctacaataatccacgtagttaaagtcatatatacaat |
32941273 |
T |
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| Q |
119 |
tcacc |
123 |
Q |
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||||| |
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| T |
32941274 |
tcacc |
32941278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 32941293 - 32941328
Alignment:
| Q |
150 |
aagcatacgtaatagacaaaactacttttttatgag |
185 |
Q |
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| T |
32941293 |
aagcatacgtaatagacaaaactacttttttatgag |
32941328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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