View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_low_16 (Length: 446)
Name: NF19583_low_16
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 15 - 429
Target Start/End: Complemental strand, 45203464 - 45203050
Alignment:
| Q |
15 |
ttggatccctttctgatagcatgaaagtagtaacttagaaagtgaaaatgtatattattacaagacaaaacataacaatcgagaatagaagattgaaaaa |
114 |
Q |
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| T |
45203464 |
ttggatccctttctgatagcatgaaagtagtaacttagaaagtgaaaatgtatatcattacaagacaaaacataacaatcgagaatagaagattgaaaaa |
45203365 |
T |
|
| Q |
115 |
ttgatgagtttgagaaaggttgattttgaaactgaacaaattcgattgcaaattggttcatcaacacacaaactaactatcgcaggaccatgcagttgac |
214 |
Q |
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| T |
45203364 |
ttgatgagtttgagaaaggttgattttgaaactgaacaaattcgattgcaaattggttcatcaacacacaaactaactatcgcaggaccatgcagttgac |
45203265 |
T |
|
| Q |
215 |
ttgctatattgtcaactgccaccacaatggcctagaagagcaacacttagcatgtaaatgaatggatccatggtccctccaagttttaagaacatattct |
314 |
Q |
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| T |
45203264 |
ttactatattgtcaactgccaccacaatggcctagaagagcaacacttagcatgtaaatgaatggatccatggtccctccaagttttaagaacatattct |
45203165 |
T |
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| Q |
315 |
taagtcattaatctctttctcttgcagcacatatgatacaatgaagcaagcacatatgatacaagtcagcatataccaatatagtgttatttttatgtga |
414 |
Q |
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| T |
45203164 |
taagtcattaatctctttctcttgcagcacatatgatacaatgaagcaagcacatatgatacaagtcagcatataccaatatagtgttatttttatgtga |
45203065 |
T |
|
| Q |
415 |
attatatgacatgat |
429 |
Q |
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| T |
45203064 |
attatatgacatgat |
45203050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 55 - 314
Target Start/End: Complemental strand, 45206909 - 45206651
Alignment:
| Q |
55 |
agtgaaaatgtatattattacaagacaaaacataacaatcgagaatagaagattgaaaaattgat--gagtttgagaaaggttgattttgaaactgaaca |
152 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| | |||||||||| | ||||| || ||||||||||| ||| ||| |||| ||||| |
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| T |
45206909 |
agtgaaaatgtatatcattacaagacaaaacataacaatcgagcagagaagattgattatttgatatgattttgagaaagggtgaatttcaaacagaaca |
45206810 |
T |
|
| Q |
153 |
aattcgattgcaaattggttcatcaacacacaaactaactatcgcaggaccatgcagttgacttgctatattgtcaactgccaccacaatggcctagaag |
252 |
Q |
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| T |
45206809 |
gattcgattgcaaattggttcatcaacacacaaattaacccatacaggaccatgcagttgacttgcaatattgtcaactgccaccacattggcctagaag |
45206710 |
T |
|
| Q |
253 |
agcaacacttagcatgtaaatgaatggatccatggtccctccaagtt-ttaagaacatattct |
314 |
Q |
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| T |
45206709 |
agcaacacttagcatgttaataaatgg----ttggtccctgcaagttcttaagaacatattct |
45206651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 45211866 - 45211899
Alignment:
| Q |
196 |
gcaggaccatgcagttgacttgctatattgtcaa |
229 |
Q |
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| T |
45211866 |
gcaggaccatgcagttgacttgccatattgtcaa |
45211899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 45211965 - 45212021
Alignment:
| Q |
300 |
ttaagaacatattcttaagtcattaatctctttctcttgcagcacatatgatacaatg |
357 |
Q |
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| T |
45211965 |
ttaagaatatattcttaactcatta-tctctttctctagcagcagatatgatataatg |
45212021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 10418794 - 10418721
Alignment:
| Q |
282 |
ccatggtccctccaa-gttttaagaacatattc--ttaagtcattaatctctttctcttgcagcacatatgata |
352 |
Q |
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| T |
10418794 |
ccatggtccctccaaagttttaagaacatattcaattaagtcattaatctctttctcttgcagcacatatgata |
10418721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 429
Target Start/End: Complemental strand, 10418691 - 10418655
Alignment:
| Q |
393 |
atatagtgttatttttatgtgaattatatgacatgat |
429 |
Q |
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| T |
10418691 |
atatagtgttatttttatgtgaattatatgatatgat |
10418655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 197 - 314
Target Start/End: Original strand, 21466074 - 21466187
Alignment:
| Q |
197 |
caggaccatgcagttgacttgctatattgtcaactgccaccacaatggcctagaagagcaacacttagcatgtaaatgaatggatccatggtccctccaa |
296 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||| || |||||||||||| ||||||||||| ||| |||| || |||||||| ||| |
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| T |
21466074 |
caggaccttgcagttgacttgcaatattgtcaactgccaccacattgttctagaagagcaatacttagcatgttaataaatg-at---tggtccctgcaa |
21466169 |
T |
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| Q |
297 |
gttttaagaacatattct |
314 |
Q |
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||| | |||||||||||| |
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| T |
21466170 |
gttcttagaacatattct |
21466187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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