View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19583_low_18 (Length: 432)
Name: NF19583_low_18
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Original strand, 29433299 - 29433699
Alignment:
| Q |
16 |
atacataagttctcaatttgttgtgcagttttttgctgaagccggtttcccttgtccgcgtaaaagaaatccttctgatcacttcctaagatgtatcaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29433299 |
atacataagttctcaatttgttgtgcagttttttgctgaagccggtttcccttgtccgcgtaaaagaaatccttctgatcacttcctaagatgtatcaat |
29433398 |
T |
|
| Q |
116 |
tctgatttcgatgttgtaacggctacactaaaggggtctcaaagaattcatgtatgtatcatttagtaattctaaatttataatcatatgctttgaggtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29433399 |
tctgatttcgatgttgtaacggctacactaaaggggtctcaaagaattcatgtatgtatcatttagtaattctaaatttataatcatatgctttgaggtt |
29433498 |
T |
|
| Q |
216 |
ttagatgattaattatatactcatcccgctaaggatcttttggaagagcttatcttatgacatcactaatgcagatgattgaaatagcttatgataccat |
315 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29433499 |
ttagatgattaatcatatactcatcccgctaaggatcttttggaagagcttatcttatgacatcactaatgcagatgattgaaatagcttatgataacat |
29433598 |
T |
|
| Q |
316 |
tataagttacttcagattacgttataatataggtcataagttgttttctgcttattttcaaaaactaatctagatagtttattgtcgtaaattgttttca |
415 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29433599 |
tataatttacttcagattactttataatataggtcataagttgttttctgcttattttcaaaaactaatctagatagtttattgtcgtaaattcttttca |
29433698 |
T |
|
| Q |
416 |
g |
416 |
Q |
| |
|
| |
|
|
| T |
29433699 |
g |
29433699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 31 - 276
Target Start/End: Original strand, 29466342 - 29466579
Alignment:
| Q |
31 |
atttgttgtgcagttttttgctgaagccggtttcccttgtccgcgtaaaagaaatccttctgatcacttcctaagatgtatcaattctgatttcgatgtt |
130 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |
|
|
| T |
29466342 |
atttcttgtgcagttttttgctgaagctggtttcccttgtccacgtaaaagaaatccttctgatcacttcctaagatgcatcaattctgacttcgacgtt |
29466441 |
T |
|
| Q |
131 |
gtaacggctacactaaaggggtctcaaagaattcatgtatgtatcatttagtaattctaaatttataatcatatgctttgaggttttagatgattaatta |
230 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||| ||||||||| |||||||||||||||| ||||||||||||||| | ||||||||||||| |
|
|
| T |
29466442 |
gtaacggctacactgaagggatctcaaaggattcctgtatgtattatttagtaattctaaa--------catatgctttgaggtgtcagatgattaatta |
29466533 |
T |
|
| Q |
231 |
tatactcatcccgctaaggatcttttggaagagcttatcttatgac |
276 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||||||||||||| |
|
|
| T |
29466534 |
tatactcatcctacttaggatcttttgcaagagcttatcttatgac |
29466579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University