View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_low_24 (Length: 373)
Name: NF19583_low_24
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 36312 - 35952
Alignment:
| Q |
18 |
attctaaatctagtgaagtccgttttcaaccattatctatacttatca---------------taaatggtgtctggtaaaaaatgtggcaacagaaata |
102 |
Q |
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| T |
36312 |
attctaaatctagtgaagtccgttt-caaccattatctatacttatcaccaattcatgattcataaatggtgtctggtaaaaaatgtggcaacagaaata |
36214 |
T |
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| Q |
103 |
gcaaaaactttcgtatatacttccagcacaaaacataaatagtacataatacttacaatttgttgcaaagatgtagagaaaactgctaaacatgcacatg |
202 |
Q |
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| T |
36213 |
gcaaaaactttcatatatacttccagcacaaaacataaatagtacataatacttacaatttgttgcaaagatgtagagaaaactgctaaacatgcacatg |
36114 |
T |
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| Q |
203 |
tgaaacctgtgaggttaacttttacatcagttacggtacaaacaccaacaccaataaccacaaccaccactgaaattttcactttccttgaaaagtgctt |
302 |
Q |
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| T |
36113 |
tgaaacctttgaggttaacttttacatcagttacggtacaaacaccaacaccaataaccacaaccaccactgaaattttcactttccttgaaaagtgctt |
36014 |
T |
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| Q |
303 |
gttgtgaagaatcctttccataacacaaaccacgggaatcatactcaattttgatatctgtg |
364 |
Q |
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| T |
36013 |
gttgtgaagaatcctttccataacacaaaccacgggaatcatactcaattttgatatctgtg |
35952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 205 - 363
Target Start/End: Original strand, 8676538 - 8676696
Alignment:
| Q |
205 |
aaacctgtgaggttaacttttacatcagttacggtacaaacaccaacaccaataaccacaaccaccactgaaattttcactttccttgaaaagtgcttgt |
304 |
Q |
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| T |
8676538 |
aaacctttgaagttaacatttacatcagttacggtgcaaacaccaacaccaataaccacaaccatgaccgacactttcacttcccttgagtagtgtttgc |
8676637 |
T |
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| Q |
305 |
tgtgaagaatcctttccataacacaaaccacgggaatcatactcaattttgatatctgt |
363 |
Q |
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| T |
8676638 |
tgtgaaggatccattccatcacacaaaccaccggaatcatgcttagttttgatatctgt |
8676696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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