View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_low_27 (Length: 343)
Name: NF19583_low_27
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 29551555 - 29551246
Alignment:
| Q |
11 |
cacagatagaggaagcaagcaataagcagctagtagcaatatgattctaatacacatcatccccataatcacttctttgaattgtctctgcctccacaca |
110 |
Q |
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| T |
29551555 |
cacagatagaggaagcaagcaataagcagctagtagaaatatgattctaatacacataatccccataatcacttatttgaattgtctctgcctccacaca |
29551456 |
T |
|
| Q |
111 |
aacacagaagctctatatatacctagcttttccttttctagctagctatactttgtgtggagctcactatgcaatgcaaattgaggagaatggaacaacc |
210 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29551455 |
aacacagaagctctatatatacctagctttcccttttgtagctagctatactttgtgtggagctcactat-----gcaaattgaggagaatggaacaacc |
29551361 |
T |
|
| Q |
211 |
ttatatatggtactctttgttgtcaagtccttttaataagttggttgaaaaatatacataacatattataacagtgttttgaatttaacagtgttttgaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29551360 |
ttatatatggtactctttgttgtcaagtccttttaataagttggttgaaaaatatacataacatattataacagtgtttcgaatttaacagtgttttgaa |
29551261 |
T |
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| Q |
311 |
tataggccacgatac |
325 |
Q |
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||||||||||||||| |
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| T |
29551260 |
tataggccacgatac |
29551246 |
T |
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