View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_low_3 (Length: 659)
Name: NF19583_low_3
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 18 - 652
Target Start/End: Complemental strand, 47583660 - 47583023
Alignment:
| Q |
18 |
aatccaaccctccattgctgcattgatctacaattctcactgtttcctgtgctcctgtccctgaatttgtcacctgcatcatcacatttacattcaacta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47583660 |
aatccaaccctccattgctgcattgatctacaattctcactgtttcctgtgctcctgtacctgaatttgtcacctgcatcatcacatttacattcaacta |
47583561 |
T |
|
| Q |
118 |
catatcaattcatctgaataagaaactaaaaatcatgatttaatcaattgaactatgatctgaaga---tatcgcaaaaagtaatagaattggttctaat |
214 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
47583560 |
catatcaattcatcggaataagaaactaaaaatcatgatttaatcaattgaactatgatctgaagaagatatcacaaaaagtaatagaattggttctaat |
47583461 |
T |
|
| Q |
215 |
tagttgttaccctgaggcactttccacaagaagcttgaccacgaggtccaacagggccacaaaaagcagtccaaccatacttgctacgccatgagtaagg |
314 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47583460 |
tagttgttaccctgagacactttccacaagaagcttgaccacgaggtccaacagggccacaaaaagcagtccaaccatacttgctacgccatgagtaagg |
47583361 |
T |
|
| Q |
315 |
tttgcttgcatcccaagttgaacaataagcacttacagcgtttaagtcccatccatgttgctctggttgatagtaatgatatgtggcacgaacattagaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47583360 |
tttgcttgcatcccaagttgaacaataagcacttacagcgtttaagtcccatccatgttgatctggttgatagtaatgatatgtggcacgaacattagaa |
47583261 |
T |
|
| Q |
415 |
gcactttcaccaccaccactactgccatgacagttactctgacagttcggaccacagtattcatctgtggtaccacagtaaccgtattggctgcaacaaa |
514 |
Q |
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| T |
47583260 |
gcactttcaccaccaccactactgccatgacagttactctgacagttcggaccacagtattcatctgtggtaccacagtaaccgtattggctgcaacaaa |
47583161 |
T |
|
| Q |
515 |
ggttgtttggacatgtttttcctccagcttgtctaccgcattgttctgcaatcgttgctgcaatcaaacacaccagtattaataccgctaattttcccat |
614 |
Q |
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| T |
47583160 |
ggttgtttggacatgtttttcctccagcttgtctaccgcattgttctgcaatcgttgctgcaatcaaacacaccagtattaataccgctaattttcccat |
47583061 |
T |
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| Q |
615 |
gtctaatctaatacaatttgatattttcccctatgttt |
652 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |
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| T |
47583060 |
gtctaatctaatacaatttgatattttcccctgtgttt |
47583023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 35929089 - 35929159
Alignment:
| Q |
238 |
ccacaagaagcttgaccacgaggtccaacagggccacaaaaagcagtccaaccatacttgctacgccatga |
308 |
Q |
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| T |
35929089 |
ccacaagaagcttggccttgaggaccaacaggtccacagaaggcagtccaaccatatttgctacgccatga |
35929159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 35939848 - 35939885
Alignment:
| Q |
271 |
ccacaaaaagcagtccaaccatacttgctacgccatga |
308 |
Q |
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| T |
35939848 |
ccacaaaaggcagtccaaccatatttgctacgccatga |
35939885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 308
Target Start/End: Original strand, 31192561 - 31192638
Alignment:
| Q |
231 |
gcactttccacaagaagcttgaccacgaggtccaacagggccacaaaaagcagtccaaccatacttgctacgccatga |
308 |
Q |
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|||||| ||||||| ||||| ||| ||| |||||||| ||||||||||||||| ||||||| ||||| ||||||| |
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| T |
31192561 |
gcacttgccacaagcagctttgccaacaggaccaacaggtccacaaaaagcagtcaaaccatatttgcttggccatga |
31192638 |
T |
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