View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_low_36 (Length: 311)
Name: NF19583_low_36
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_low_36 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 31094379 - 31094550
Alignment:
| Q |
1 |
aatcaatgcaccaaccaagtggacaacacaaagtaattgggtccaagtagctacaatgaattgtaacatagacgaatactattttataagtaaactaggt |
100 |
Q |
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| T |
31094379 |
aatcaatataccaaccaagtggacgacacaaagtaattgggtccaagtagctacaatgaattgtaacatagacgaatactattttataagtaaactaggt |
31094478 |
T |
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| Q |
101 |
gtgtgatgtttaagtttttatcgatgtgagactct-aagactgctataaagtaggtggaactttctttctctcg |
173 |
Q |
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| T |
31094479 |
gtgtgatg--taagtttttatcgatgtgggactctcaagagtgctataaagtgggtggaactttctttctctcg |
31094550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 31050838 - 31050790
Alignment:
| Q |
80 |
tattttataagtaaactaggtgtgtgatgtttaagtttttatcgatgtg |
128 |
Q |
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| T |
31050838 |
tattttataggtaaacttggtgtgtgatgtttaagtttttatcgatgtg |
31050790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 29735 - 29894
Alignment:
| Q |
16 |
caagtggacaacacaaagtaattgggtccaagtagctacaatgaattgtaacatagacgaatactattttataagtaaactaggtgtgtgatg-tttaag |
114 |
Q |
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| T |
29735 |
caagtggacaacacaaagtaattgggtccaaccagttaatctaaattgttgcatagatgaatactattttataagtaaacttgatgtgtaatgttttatg |
29834 |
T |
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| Q |
115 |
tttttatcgatgtgagactctaagactgctataaagtag--gtggaactttctttctctcg |
173 |
Q |
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| T |
29835 |
tttttatcgatgtgagact-taagagtgctataaagtgggtgtggaactttctttctctcg |
29894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 172
Target Start/End: Original strand, 3125 - 3241
Alignment:
| Q |
57 |
tgaattgtaacatagacgaatactattttataagtaaactaggtgtgtgatgtttaagtttttatcgatgtgagactctaagactgctataaagtag--g |
154 |
Q |
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| T |
3125 |
tgaaatgtaacatagacgaatatcattttataggtaaacttggtgtgtaatgtttatgtttttatcgatgtgggactc-aagagtgctataaggtgggtg |
3223 |
T |
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| Q |
155 |
tggaactttctttctctc |
172 |
Q |
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| T |
3224 |
tggaactttctttctctc |
3241 |
T |
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