View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_low_37 (Length: 309)
Name: NF19583_low_37
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_low_37 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 30278423 - 30278115
Alignment:
| Q |
1 |
cacaattaagctgcaaaaacatcctaaacttttatattgtgttctaaaacattatgctaacaacacactctctaatgtattcttcccgacatactctttc |
100 |
Q |
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| T |
30278423 |
cacaattaagctgcaaaaacatcctaaacttttatattgtgttctaaaacattatgctaacagcacactctctaatgtattcttcccgacatactctttc |
30278324 |
T |
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| Q |
101 |
taattggcttgattttatgtggatctcactaacttacatttacgtgggatttgcatagtttagtgaaatccatttagatttatatccgttaaagagaatg |
200 |
Q |
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| T |
30278323 |
taattggcttgattttatgtggatctcactaacttacatttacgtgagatttgcatagtttagtgaaatccatttaaatttatatctattaaagagaatg |
30278224 |
T |
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| Q |
201 |
tgttaaaaagtgtgttgcattatattctcacttgcggttaccaatctcattaaaaacaatgagagaactttctagtgaaagaaggtataagagaatttaa |
300 |
Q |
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| T |
30278223 |
tgttaaaaagtgtgttgcattatattctcacttacggttaccaatctcattaaaaacaatgagagaactttctagtgaaagaaggtataagagaatttaa |
30278124 |
T |
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| Q |
301 |
tatgcacca |
309 |
Q |
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||||||||| |
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| T |
30278123 |
tatgcacca |
30278115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 30278094 - 30278031
Alignment:
| Q |
249 |
attaaaaacaatgagagaactttctagtgaaagaaggt---ataagagaatttaatatgcacca |
309 |
Q |
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| T |
30278094 |
attaaaaacaatgaaagagctttctagtgaaagaaggtataataagagaatttaatatgcacca |
30278031 |
T |
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