View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_low_39 (Length: 299)
Name: NF19583_low_39
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_low_39 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 299
Target Start/End: Original strand, 6934840 - 6935129
Alignment:
| Q |
12 |
aagaatactgtgagcacttaccattggtataaagctttgagcatgtctgatacaaattatgcttttcaatgtgcaagatcaactccctggctt-ccttcc |
110 |
Q |
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| T |
6934840 |
aagaatactattagcacttaccattggtataaagctttgagcatgtctgatacaaattatgcctttcaatgtgcaagatcaactccctggctttccttcc |
6934939 |
T |
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| Q |
111 |
ttcagttcaaatgagcactattaaaaagctttt-aaaacaacttcacttgtaagaagcctttataagttgattaacgttaaagagaccaaaaaagggatt |
209 |
Q |
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| T |
6934940 |
ttcagttcaaatgagcactattaaaaagctttttaaaacaacttcacttgtaagaagcctttataagttgattaacgttaaagagaccaaaaaagggatt |
6935039 |
T |
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| Q |
210 |
tgctagcactatgtgattatctacaatactaaaaactcaaacatgttaatcttgtagtttcagcatcagttgattaacgttaaagagacc |
299 |
Q |
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| T |
6935040 |
tgctagcactatgtgattatctacaatactaaaacctcgaacatcttaatcttgtagtttcagcatcagttgattaacgttaaagagacc |
6935129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 6526299 - 6526258
Alignment:
| Q |
68 |
ttatgcttttcaatgtgcaagatcaactccctggcttccttc |
109 |
Q |
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| T |
6526299 |
ttatgcctttgaatgtgcaagatcaactccctggcatccttc |
6526258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 6843077 - 6843036
Alignment:
| Q |
68 |
ttatgcttttcaatgtgcaagatcaactccctggcttccttc |
109 |
Q |
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| T |
6843077 |
ttatgcctttgaatgtgcaagatcaactccctggcatccttc |
6843036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 6935107 - 6935135
Alignment:
| Q |
175 |
agttgattaacgttaaagagaccaaaaaa |
203 |
Q |
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| T |
6935107 |
agttgattaacgttaaagagaccaaaaaa |
6935135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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