View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19583_low_4 (Length: 638)

Name: NF19583_low_4
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19583_low_4
NF19583_low_4
[»] chr1 (5 HSPs)
chr1 (18-435)||(11805136-11805554)
chr1 (18-283)||(11819085-11819352)
chr1 (516-618)||(11819722-11819823)
chr1 (18-61)||(11820552-11820595)
chr1 (463-511)||(11819564-11819612)
[»] chr5 (7 HSPs)
chr5 (457-492)||(19783656-19783691)
chr5 (458-495)||(32460013-32460050)
chr5 (452-492)||(31159434-31159474)
chr5 (453-491)||(7070923-7070961)
chr5 (458-495)||(3551328-3551365)
chr5 (457-494)||(12285623-12285660)
chr5 (452-492)||(9123861-9123901)
[»] chr2 (2 HSPs)
chr2 (457-494)||(10076877-10076914)
chr2 (452-494)||(17842728-17842770)
[»] chr6 (2 HSPs)
chr6 (453-492)||(6470633-6470672)
chr6 (453-494)||(32409195-32409236)
[»] chr4 (3 HSPs)
chr4 (457-492)||(19124643-19124678)
chr4 (457-495)||(24872938-24872976)
chr4 (453-485)||(47016630-47016662)
[»] chr3 (2 HSPs)
chr3 (453-492)||(54557622-54557661)
chr3 (453-483)||(54451714-54451744)
[»] scaffold0050 (1 HSPs)
scaffold0050 (453-495)||(83285-83327)
[»] chr7 (2 HSPs)
chr7 (453-491)||(35165539-35165577)
chr7 (452-492)||(41860274-41860314)
[»] chr8 (1 HSPs)
chr8 (459-495)||(10310548-10310584)


Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 11805136 - 11805554
Alignment:
Q  18 atggcacacatccaaacccaatattgtatatccatctttgaataattgaatatatctaatttatttgcttattatatctagttttggaagtggatcgttg 117  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  11805136 atggcacacatccaaacccaatattctatttccatctttgaataattggatatatctagtttatttgcttattatatctagttttggaagtgggtcgttg 11805235  T
Q  118 aagagggactttaaaatatctagttcatttgcgagttgcatttatctccccctagat-ttgtgtcagagttggtgaggatgggatggttcaccattgatt 216  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11805236 aagagggacttgaatatatctagttcatttgcgagttgcatttatctccccctagatcttgtgtcagagttggtgaggatgggatggttcaccattgatt 11805335  T
Q  217 gtatttgcttggttggttgctataattgggtacgatcggtaaaaggaattaatggaacttgtggatttatggtcatgttgggatacaactttatgattgt 316  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11805336 gtatttgcttggttggttgctataattgggtacgatcgataaaaggaattaatggaacttgtggatttatggtcatgttgggatacaactttatgattgt 11805435  T
Q  317 actcttgcatcctagcacatgacatgggtggtgaatggtcaatggtgatttgatttataaaagaagaggatcctaactcgtttaacggttaaaaatacat 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11805436 actcttgcatcctagcacatgacatgggtggtgaatggtcaatggtgatttgatttataaaagaagaggatgctaactcgtttaacggttaaaaatacat 11805535  T
Q  417 ttataagtgaataaataac 435  Q
    |||||||||||||||||||    
T  11805536 ttataagtgaataaataac 11805554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 11819085 - 11819352
Alignment:
Q  18 atggcacacatccaaacccaatattgtatatccatctttgaataattgaatatatctaa--------tttatttgcttattatatctagttttggaagtg 109  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||         || |||||||||||||||||||| |||||||||    
T  11819085 atggcacacatccaaacccagtattgtatttccatctttgaataattgaatatatctatctatctagttcatttgcttattatatctagtcttggaagtg 11819184  T
Q  110 gatcgttgaagagggactttaaaatatctagttcatttgcgagttgcatttatctccccctagattt-gtgtcagagttggtgaggatgggatggttcac 208  Q
    |  |||||||||||||||| || | || ||  |        |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||     
T  11819185 ggacgttgaagagggacttcaataaatatatct--------agttgcatttatcttcccctagattttgtgtcagagttggtgaggatgggatggttcaa 11819276  T
Q  209 cattgatt-gtatttgcttggttggttgctataattgggtacgatcggtaaaaggaattaatggaacttgtggatt 283  Q
    |||||||| | |||  ||| |||| | |||||| ||||||||||||| ||||||||||||||||||||| ||||||    
T  11819277 cattgattagcattgcctttgttgatagctatagttgggtacgatcgataaaaggaattaatggaacttatggatt 11819352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 516 - 618
Target Start/End: Original strand, 11819722 - 11819823
Alignment:
Q  516 tgtcgcttttgataaaagagattaatgacaatgtggtcatgttggggatacagctttataattgtactcttctatccatctagggtttgtgtttaggtgt 615  Q
    ||||||| |||||||||||||||||||||| |||| |||||| ||| ||||| |||||| ||||||||||||||||||||||||||||||  || |||||    
T  11819722 tgtcgctcttgataaaagagattaatgacactgtgatcatgtaggg-atacaactttatcattgtactcttctatccatctagggtttgtaattcggtgt 11819820  T
Q  616 ctt 618  Q
    |||    
T  11819821 ctt 11819823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 11820552 - 11820595
Alignment:
Q  18 atggcacacatccaaacccaatattgtatatccatctttgaata 61  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  11820552 atggcacacatccgaacccaaaattgtatatccatctttgaata 11820595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 463 - 511
Target Start/End: Original strand, 11819564 - 11819612
Alignment:
Q  463 ttatgtattgtctttatcaactaagttaagttttcaaagaatattttga 511  Q
    ||||||||| ||||||||||||||||||| ||| || |||| |||||||    
T  11819564 ttatgtattatctttatcaactaagttaaatttacagagaacattttga 11819612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 457 - 492
Target Start/End: Original strand, 19783656 - 19783691
Alignment:
Q  457 catatattatgtattgtctttatcaactaagttaag 492  Q
    ||||||||||||||||||||||||||||||||||||    
T  19783656 catatattatgtattgtctttatcaactaagttaag 19783691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 458 - 495
Target Start/End: Complemental strand, 32460050 - 32460013
Alignment:
Q  458 atatattatgtattgtctttatcaactaagttaagttt 495  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  32460050 atatattatgtattgtctttatcaactgagttaagttt 32460013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 452 - 492
Target Start/End: Complemental strand, 31159474 - 31159434
Alignment:
Q  452 tcttacatatattatgtattgtctttatcaactaagttaag 492  Q
    |||| |||||||||||||||||||||||||||| |||||||    
T  31159474 tcttgcatatattatgtattgtctttatcaactgagttaag 31159434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 491
Target Start/End: Complemental strand, 7070961 - 7070923
Alignment:
Q  453 cttacatatattatgtattgtctttatcaactaagttaa 491  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  7070961 cttacatatattatgcattgtctgtatcaactaagttaa 7070923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 495
Target Start/End: Complemental strand, 3551365 - 3551328
Alignment:
Q  458 atatattatgtattgtctttatcaactaagttaagttt 495  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  3551365 atatattatgtattgtttttatcaacttagttaagttt 3551328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 494
Target Start/End: Original strand, 12285623 - 12285660
Alignment:
Q  457 catatattatgtattgtctttatcaactaagttaagtt 494  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  12285623 catatattatatattgtctttatcaactgagttaagtt 12285660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 452 - 492
Target Start/End: Original strand, 9123861 - 9123901
Alignment:
Q  452 tcttacatatattatgtattgtctttatcaactaagttaag 492  Q
    |||||||||||||||| |||||||||| ||||| |||||||    
T  9123861 tcttacatatattatgcattgtctttaccaactgagttaag 9123901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 457 - 494
Target Start/End: Complemental strand, 10076914 - 10076877
Alignment:
Q  457 catatattatgtattgtctttatcaactaagttaagtt 494  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  10076914 catatattatgtattgtctttatcagctaagttaagtt 10076877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 452 - 494
Target Start/End: Original strand, 17842728 - 17842770
Alignment:
Q  452 tcttacatatattatgtattgtctttatcaactaagttaagtt 494  Q
    |||||||||||||||| |||||  |||||||||||||||||||    
T  17842728 tcttacatatattatgcattgttcttatcaactaagttaagtt 17842770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 492
Target Start/End: Original strand, 6470633 - 6470672
Alignment:
Q  453 cttacatatattatgtattgtctttatcaactaagttaag 492  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  6470633 cttacatatattatgcattgtctttatcaactgagttaag 6470672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 494
Target Start/End: Original strand, 32409195 - 32409236
Alignment:
Q  453 cttacatatattatgtattgtctttatcaactaagttaagtt 494  Q
    ||||||||||||||| |||||||||| ||||| |||||||||    
T  32409195 cttacatatattatgcattgtctttaccaactcagttaagtt 32409236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 492
Target Start/End: Original strand, 19124643 - 19124678
Alignment:
Q  457 catatattatgtattgtctttatcaactaagttaag 492  Q
    |||||||||||||||||||||||||||| |||||||    
T  19124643 catatattatgtattgtctttatcaactgagttaag 19124678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 457 - 495
Target Start/End: Original strand, 24872938 - 24872976
Alignment:
Q  457 catatattatgtattgtctttatcaactaagttaagttt 495  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  24872938 catatattatgtaatgtctgtatcaactaagttaagttt 24872976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 453 - 485
Target Start/End: Complemental strand, 47016662 - 47016630
Alignment:
Q  453 cttacatatattatgtattgtctttatcaacta 485  Q
    ||||||||||||||| |||||||||||||||||    
T  47016662 cttacatatattatgcattgtctttatcaacta 47016630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 492
Target Start/End: Complemental strand, 54557661 - 54557622
Alignment:
Q  453 cttacatatattatgtattgtctttatcaactaagttaag 492  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  54557661 cttacatatattatgtattgtctctatcaactaaattaag 54557622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 483
Target Start/End: Original strand, 54451714 - 54451744
Alignment:
Q  453 cttacatatattatgtattgtctttatcaac 483  Q
    |||||||||||||||||||||||||||||||    
T  54451714 cttacatatattatgtattgtctttatcaac 54451744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 495
Target Start/End: Original strand, 83285 - 83327
Alignment:
Q  453 cttacatatattatgtattgtctttatcaactaagttaagttt 495  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||    
T  83285 cttacgtatattatgaattgtctttatcaactgagttaagttt 83327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 491
Target Start/End: Complemental strand, 35165577 - 35165539
Alignment:
Q  453 cttacatatattatgtattgtctttatcaactaagttaa 491  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  35165577 cttacatatattatgtattgtcgttatcaactgagttaa 35165539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 452 - 492
Target Start/End: Original strand, 41860274 - 41860314
Alignment:
Q  452 tcttacatatattatgtattgtctttatcaactaagttaag 492  Q
    ||||| |||||||||| |||||||||||||| |||||||||    
T  41860274 tcttatatatattatgcattgtctttatcaattaagttaag 41860314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 495
Target Start/End: Complemental strand, 10310584 - 10310548
Alignment:
Q  459 tatattatgtattgtctttatcaactaagttaagttt 495  Q
    |||||||| |||| |||||||||||||||||||||||    
T  10310584 tatattatttattatctttatcaactaagttaagttt 10310548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University