View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19583_low_44 (Length: 289)
Name: NF19583_low_44
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_low_44 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 36314882 - 36314608
Alignment:
| Q |
1 |
ttcatggttgactcctttgctacaaacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36314882 |
ttcatggttgactcctttgctacaaacgtcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcgggaaagtgtat |
36314783 |
T |
|
| Q |
101 |
tggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36314782 |
tggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccagtgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaag |
36314683 |
T |
|
| Q |
201 |
attctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagttaacaagtg |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36314682 |
attctttcgcttttgaagttaaagatgggaagtttatatgatgggagctatcctcgaagggcaagttaacaagtg |
36314608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 19)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 19345055 - 19345312
Alignment:
| Q |
1 |
ttcatggttgactcctttgctacaaacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtat |
100 |
Q |
| |
|
||||||| ||||||||| ||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| || |||| |
|
|
| T |
19345055 |
ttcatggatgactccttcgctaccaactccaggtgaatttagtcttgaatgggaaccaaaagaaggtgaattgaacatcaagaaaagcggcatagcgtat |
19345154 |
T |
|
| Q |
101 |
tggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaag |
200 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |||||||||||||| | ||| ||||||| ||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
19345155 |
tggaaaagcggaaaacttaatagcaatggaatattcgagaacattcccacgaaagttcaacgtatatatcagtacattattgtctctaacaagaatgaag |
19345254 |
T |
|
| Q |
201 |
attctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaa |
258 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||| | ||| ||||||| |
|
|
| T |
19345255 |
attctttcgctttcgaagttaaagatgggaagtttgcacgatggcaactaacctcgaa |
19345312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 19390473 - 19390712
Alignment:
| Q |
5 |
tggttgactcctttgctacaaacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattgga |
104 |
Q |
| |
|
|||||| || ||| ||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19390473 |
tggttggcttcttcgctaccaactccaggtgaatttagtcttgaatgggaaccaaaacaaggggaattgaacatcaagaaacgcggcaaagtgtattgga |
19390572 |
T |
|
| Q |
105 |
aaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattc |
204 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||| |||||||||||| ||| ||||| ||||||||||| ||||||||| |||||||||| |
|
|
| T |
19390573 |
aaagcggaaaacttaaaagcaatggtttattcgagaacattccggtgaatgttcaacgtatatatcaatacattattgtctctaacaaggatgaagattc |
19390672 |
T |
|
| Q |
205 |
tttcgcttttgaagttaaagatgggaagtttatacgatgg |
244 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19390673 |
ttttgctttcgaagttaaagatgggaagtttatacgatgg |
19390712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 19504288 - 19504028
Alignment:
| Q |
1 |
ttcatggttgactcctttgctacaaacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtat |
100 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||| |||||||||||| ||||||||||||| || ||||||||||||| | ||| ||||||||||| || |
|
|
| T |
19504288 |
ttcatggttgactccttcgctaccaactccaggtaaatttagtcttgtatgggaaccaaaagaacgtgaattgaacataaggaaaagcggcaaagtgcat |
19504189 |
T |
|
| Q |
101 |
tggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaag |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||| | || ||||||| ||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
19504188 |
tggaaaagcggaaaacttaaaagcaatggaatattcgagaacattcccacaaaagttcaacgtatatatcagtacattattgtctctaacaagaatgaag |
19504089 |
T |
|
| Q |
201 |
attctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaaggg |
261 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||| | ||| |||||||||| |
|
|
| T |
19504088 |
attctttcgctttcgaagttaaagatgggaagtttgcacgatggcaactaacctcgaaggg |
19504028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 19337339 - 19337616
Alignment:
| Q |
1 |
ttcatggttgactcctttgctacaaacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtat |
100 |
Q |
| |
|
|||| ||||| ||| || ||||| |||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| | ||||||||| || |
|
|
| T |
19337339 |
ttcacggttggctcattcgctaccaactccaggtgaacttagtcttgaatgggaaccaaaagaaggtgaattgaacatcaggaaaagtggcaaagtgcat |
19337438 |
T |
|
| Q |
101 |
tggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaag |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||| || |||||||||||||| ||||||||| |||||| |
|
|
| T |
19337439 |
tggaaaagtggaaaactcaaaagcaatggaatgttcgagaacattcctgcgaaagttcaacgtatataccagtacattattgtgtctaacaaggatgaag |
19337538 |
T |
|
| Q |
201 |
attctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagttaacaagtgatg |
278 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||| ||||| ||||||| | ||||| |||||||| |
|
|
| T |
19337539 |
attcttttgcttttgaagttaaagatgggaaatttatacgatggttcatatccccgaaggggaggttaataagtgatg |
19337616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 36 - 281
Target Start/End: Original strand, 19410701 - 19410946
Alignment:
| Q |
36 |
aatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgtt |
135 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | || |
|
|
| T |
19410701 |
aatttaatcttgaatgggaaccaaaacaaggtgaattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattatt |
19410800 |
T |
|
| Q |
136 |
cgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagttt |
235 |
Q |
| |
|
|||||| ||||| ||||||||| || |||||||||||||||||| ||||||||| |||||||||||||| | || ||||||||||||||||||||| |
|
|
| T |
19410801 |
cgagaatattccggccaatgttcaaagtaggtatcagtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt |
19410900 |
T |
|
| Q |
236 |
atacgatgggagctatcctcgaagggcaagttaacaagtgatgatg |
281 |
Q |
| |
|
|| |||||| |||||||||||||| |||||| | ||||||||| |
|
|
| T |
19410901 |
gcacaatgggaactatcctcgaaggggaagttagtaggtgatgatg |
19410946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 36 - 281
Target Start/End: Original strand, 19457720 - 19457965
Alignment:
| Q |
36 |
aatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgtt |
135 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | || |
|
|
| T |
19457720 |
aatttaatcttgaatgggaaccaaaacaaggtgaattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattatt |
19457819 |
T |
|
| Q |
136 |
cgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagttt |
235 |
Q |
| |
|
|||||| ||||| ||||||||| || |||||||||||||||||| ||||||||| |||||||||||||| | || ||||||||||||||||||||| |
|
|
| T |
19457820 |
cgagaatattccggccaatgttcaaagtaggtatcagtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt |
19457919 |
T |
|
| Q |
236 |
atacgatgggagctatcctcgaagggcaagttaacaagtgatgatg |
281 |
Q |
| |
|
|| |||||| |||||||||||||| |||||| | ||||||||| |
|
|
| T |
19457920 |
gcacaatgggaactatcctcgaaggggaagttagtaggtgatgatg |
19457965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 36 - 281
Target Start/End: Complemental strand, 19523358 - 19523113
Alignment:
| Q |
36 |
aatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgtt |
135 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | || |
|
|
| T |
19523358 |
aatttaatcttgaatgggaaccaaaacaaggtgaattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattatt |
19523259 |
T |
|
| Q |
136 |
cgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagttt |
235 |
Q |
| |
|
|||||| ||||| ||||||||| || |||||||||||||||||| ||||||||| |||||||||||||| | || ||||||||||||||||||||| |
|
|
| T |
19523258 |
cgagaatattccggccaatgttcaaagtaggtatcagtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt |
19523159 |
T |
|
| Q |
236 |
atacgatgggagctatcctcgaagggcaagttaacaagtgatgatg |
281 |
Q |
| |
|
|| |||||| |||||||||||||| |||||| | ||||||||| |
|
|
| T |
19523158 |
gcacaatgggaactatcctcgaaggggaagttagtaggtgatgatg |
19523113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 25 - 278
Target Start/End: Original strand, 19355383 - 19355636
Alignment:
| Q |
25 |
aacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagc |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| ||||||||||| |||||||||| |||||||||| ||| |
|
|
| T |
19355383 |
aacttcaggtgaatttagtcttgaatgggaaccaaaagaaggtgaattgaacataaggaaaagcggcaaagtgcattggaaaagcggaaaacttagaagt |
19355482 |
T |
|
| Q |
125 |
aatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaag |
224 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||||| ||| |||| |||||||||||| ||||||||| ||||||||||||| ||||| |||||||| | |
|
|
| T |
19355483 |
aatggaatattcgagaacattccagcgaaagttcaaagtatatatcggtacattattgtgtctaacaaggatgaagattcttttgctttcgaagttaatg |
19355582 |
T |
|
| Q |
225 |
atgggaagtttatacgatgggagctatcctcgaagggcaagttaacaagtgatg |
278 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||||| | ||||| |||||||| |
|
|
| T |
19355583 |
atgggaattttatacgatggttcatatccccgaaggggaggttaataagtgatg |
19355636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 28 - 213
Target Start/End: Complemental strand, 19468795 - 19468610
Alignment:
| Q |
28 |
ttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaat |
127 |
Q |
| |
|
|||||||||||||| ||| || ||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19468795 |
ttcaggtgaatttaatctagattgggaaccaaaacaaggtgaattgatcatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaat |
19468696 |
T |
|
| Q |
128 |
ggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttt |
213 |
Q |
| |
|
||| | |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| |||| |
|
|
| T |
19468695 |
ggattattcgagaatattccggtgaatgttcaacatatgtatcagtacattattgtctctaacaaagacgaagattctttcacttt |
19468610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 28 - 213
Target Start/End: Complemental strand, 19555716 - 19555531
Alignment:
| Q |
28 |
ttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaat |
127 |
Q |
| |
|
|||||||||||||| ||| || ||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19555716 |
ttcaggtgaatttaatctagattgggaaccaaaacaaggtgaattgatcatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaat |
19555617 |
T |
|
| Q |
128 |
ggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttt |
213 |
Q |
| |
|
||| | |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| |||| |
|
|
| T |
19555616 |
ggattattcgagaatattccggtgaatgttcaacatatgtatcagtacattattgtctctaacaaagacgaagattctttcacttt |
19555531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 19469723 - 19469524
Alignment:
| Q |
36 |
aatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgtt |
135 |
Q |
| |
|
|||||| ||||||||||| ||||||| |||| |||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | || |
|
|
| T |
19469723 |
aatttaatcttgaatggggaccaaaagaaggagaattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattatt |
19469624 |
T |
|
| Q |
136 |
cgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagttt |
235 |
Q |
| |
|
|||||| ||||| ||||||||| ||| |||||||||||||||||| ||||||||| |||||||||||||| | || ||||||||||||||||||||| |
|
|
| T |
19469623 |
cgagaatattccggccaatgttcaaaataggtatcagtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt |
19469524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 19540647 - 19540448
Alignment:
| Q |
36 |
aatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgtt |
135 |
Q |
| |
|
|||||| ||||||||||| ||||||| |||| |||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | || |
|
|
| T |
19540647 |
aatttaatcttgaatggggaccaaaagaaggagaattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattatt |
19540548 |
T |
|
| Q |
136 |
cgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagttt |
235 |
Q |
| |
|
|||||| ||||| ||||||||| ||| |||||||||||||||||| ||||||||| |||||||||||||| | || ||||||||||||||||||||| |
|
|
| T |
19540547 |
cgagaatattccggccaatgttcaaaataggtatcagtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt |
19540448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 19592051 - 19592250
Alignment:
| Q |
36 |
aatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgtt |
135 |
Q |
| |
|
|||||| ||||||||||| ||||||| |||| |||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | || |
|
|
| T |
19592051 |
aatttaatcttgaatggggaccaaaagaaggagaattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattatt |
19592150 |
T |
|
| Q |
136 |
cgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagttt |
235 |
Q |
| |
|
|||||| ||||| ||||||||| ||| |||||||||||||||||| ||||||||| |||||||||||||| | || ||||||||||||||||||||| |
|
|
| T |
19592151 |
cgagaatattccggccaatgttcaaaataggtatcagtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt |
19592250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 19376527 - 19376733
Alignment:
| Q |
25 |
aacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagc |
124 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19376527 |
aacttcaggtgaatttagtcttgagtgggaaccaaaacaaggtgaactgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagc |
19376626 |
T |
|
| Q |
125 |
aatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaag |
224 |
Q |
| |
|
|||||| | |||||||| ||||| ||||||||| ||||||||| |||||| ||||| ||||||||| |||||||||| || ||||||| |||||| |
|
|
| T |
19376627 |
aatggattattcgagaatattccggccaatgttcaaaatatgtatcggtacatcattgtctctaacaaggatgaagattcctttagttttgaaattaaag |
19376726 |
T |
|
| Q |
225 |
atgggaa |
231 |
Q |
| |
|
|| |||| |
|
|
| T |
19376727 |
atcggaa |
19376733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 19287600 - 19287825
Alignment:
| Q |
1 |
ttcatggttgactcctttgctacaaacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtat |
100 |
Q |
| |
|
|||||||||| ||| || ||||| || |||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19287600 |
ttcatggttggctcattcgctaccaaattcaggtggatttagtcttgaatgggaacctaaagaaggtgaattgaacatcaagcaacgcggcaaagtgtat |
19287699 |
T |
|
| Q |
101 |
tggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaag |
200 |
Q |
| |
|
|||||||| ||||||| || | ||||||| | ||||||||||||||| |||| ||||||| | ||||||| ||||||||||| ||||||||| |||||| |
|
|
| T |
19287700 |
tggaaaagcggaaaacgtagacgcaatggtttattcgagaacattccagtgaaagttcaacgtgtgtatcaatacattattgtctctaacaaggatgaag |
19287799 |
T |
|
| Q |
201 |
attctttcgcttttgaagttaaagat |
226 |
Q |
| |
|
| || ||| |||| ||| | |||||| |
|
|
| T |
19287800 |
actccttcactttcgaaatcaaagat |
19287825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 19173042 - 19172821
Alignment:
| Q |
5 |
tggttgactcctttgctacaaacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtattgga |
104 |
Q |
| |
|
|||||| |||||| ||||| | |||||||| ||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19173042 |
tggttggctccttcgctaccgaattcaggtggatttagtgttgaatgggaaccaatggaaggtgaattgaacatcaagcaacgcggcaaagtgtattgga |
19172943 |
T |
|
| Q |
105 |
aaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaagattc |
204 |
Q |
| |
|
|||| ||||||||||| ||||||||| | ||| ||||||||| | |||| ||||||||| ||||||| ||||||||||| ||||||||| ||||||| || |
|
|
| T |
19172942 |
aaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgtatcaatacattattgtctctaacaaggatgaagactc |
19172843 |
T |
|
| Q |
205 |
tttcgcttttgaagttaaagat |
226 |
Q |
| |
|
||| |||| ||| | |||||| |
|
|
| T |
19172842 |
cttcactttcgaaatcaaagat |
19172821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 19404635 - 19404846
Alignment:
| Q |
2 |
tcatggttgactcctttgctacaaacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtatt |
101 |
Q |
| |
|
|||||||| ||||||| || | || ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| ||| | ||||||||||||| |
|
|
| T |
19404635 |
tcatggttaactccttcgcggccaaattcaggtaaatttagtcttgagtgggaaccaaaacaaggtgaactgaacatcaagaaaagaggcaaagtgtatt |
19404734 |
T |
|
| Q |
102 |
ggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaaga |
201 |
Q |
| |
|
||||||| ||||||||||||||| ||||| | |||||||| ||||| ||||||||| ||||||||| |||| |||||| ||||||||| ||||||| |
|
|
| T |
19404735 |
ggaaaagcggaaaacttaaaagcgatggattattcgagaatattccggccaatgttcaaactatgtatcaatacactattgtctctaacaaggatgaaga |
19404834 |
T |
|
| Q |
202 |
ttctttcgcttt |
213 |
Q |
| |
|
||||||| |||| |
|
|
| T |
19404835 |
ttctttcacttt |
19404846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 68 - 201
Target Start/End: Original strand, 19370913 - 19371046
Alignment:
| Q |
68 |
gaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgt |
167 |
Q |
| |
|
||||||||||| || |||| ||||||||| ||||||||||||||||||||| |||||||||| | ||||||||||||||| |||||| |||||| ||| |
|
|
| T |
19370913 |
gaattgaacattaagaaacaaggcaaagtgcattggaaaagtggaaaacttagaagcaatggattattcgagaacattccagagaatgtccaacatgtgt |
19371012 |
T |
|
| Q |
168 |
atcagtacattattgtttctaacaagaatgaaga |
201 |
Q |
| |
|
||| ||||| ||||| |||||||| ||||||| |
|
|
| T |
19371013 |
atcgatacatgattgtctctaacaaagatgaaga |
19371046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 68 - 201
Target Start/End: Original strand, 19341133 - 19341266
Alignment:
| Q |
68 |
gaattgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgt |
167 |
Q |
| |
|
||||||||||| || |||| ||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||| | |||||| |||||| ||| |
|
|
| T |
19341133 |
gaattgaacattaagaaacaaggcaaagtgcattggaaaagtggaaaacttggaagcaatggattattcgagaacattctagagaatgtccaacatgtgt |
19341232 |
T |
|
| Q |
168 |
atcagtacattattgtttctaacaagaatgaaga |
201 |
Q |
| |
|
||| ||||| ||||| |||||||| ||||||| |
|
|
| T |
19341233 |
atcgatacatgattgtctctaacaaagatgaaga |
19341266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 19542952 - 19543177
Alignment:
| Q |
1 |
ttcatggttgactcctttgctacaaacttcaggtgaatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcggcaaagtgtat |
100 |
Q |
| |
|
||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| |||||||| | ||||| ||| |||||||||||||| |
|
|
| T |
19542952 |
ttcatggatgactccttcgctatcaacttcaggtgaatttagtcttgaatgggaaccaaagcaacgtgaattggaaatcaagaaaagcggcaaagtgtat |
19543051 |
T |
|
| Q |
101 |
tggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttctaacaagaatgaag |
200 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| | |||| |||||| || ||||||||||| | ||||| | ||||||||||||||||| || |||||| |
|
|
| T |
19543052 |
tggaaaagcggaaaacttagaagaaatgggttattcgtgaacataccggcgaatgttcaacgtgtgtatgaatacattattgtttctaagaaagatgaag |
19543151 |
T |
|
| Q |
201 |
attctttcgcttttgaagttaaagat |
226 |
Q |
| |
|
|||| || ||||| || |||||||| |
|
|
| T |
19543152 |
attcctttacttttaaaattaaagat |
19543177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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