View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_low_52 (Length: 251)
Name: NF19583_low_52
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 30278123 - 30277889
Alignment:
| Q |
1 |
tatgcaccaaaacatgtcaatttccctatattaaaaacaatgaaagagctttctagtgaaagaaggtataataagagaatttaatatgcaccaaaacatg |
100 |
Q |
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| T |
30278123 |
tatgcaccaaaacatgtcaatttccctatattaaaaacaatgaaagagctttctagtgaaagaaggtataataagagaatttaatatgcaccaaaacatg |
30278024 |
T |
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| Q |
101 |
tcaattttcctattttagaattgtctatatcactgatgaaattatttaatttacatatagagatgggttggtggacgttcagagaattggattccatgca |
200 |
Q |
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| T |
30278023 |
tcaattttcctattttagaattgtctatatcactgatgaaattatttaatttacatatagagatgggttggtggacgttcagagaattggattccatgca |
30277924 |
T |
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| Q |
201 |
gatatattgattcctgaggtgtgacacgatcgagt |
235 |
Q |
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| T |
30277923 |
gatatattgattcctgaggtgtgacacgatcgagt |
30277889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 30278175 - 30278095
Alignment:
| Q |
30 |
attaaaaacaatgaaagagctttctagtgaaagaaggtataataagagaatttaatatgcaccaaaacatgtcaattttcctat |
113 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
30278175 |
attaaaaacaatgagagaactttctagtgaaagaaggtataa---gagaatttaatatgcaccaaaacatgtcaatttccctat |
30278095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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