View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19583_low_55 (Length: 246)
Name: NF19583_low_55
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19583_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 5282243 - 5282462
Alignment:
| Q |
13 |
ggtcctacaactgtcatttaaaactcaccattaccatttttcacacattccattacaaatatacacatatgtctgttttatgttagtgacgtggcaggaa |
112 |
Q |
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| T |
5282243 |
ggtcctacaactgtcatttaaaactcaccattaccatttttcacacattccattacaaatatacacacatgtctgttttatgttagtgacgtggcaggaa |
5282342 |
T |
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| Q |
113 |
catgtctgacaaattatcctacgtgtacttcttttgcatcgcctacatgtacctcttgcccatttctaaattaggttcagcaatttgttgacaaatactg |
212 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5282343 |
catgcctgacaaattatcctatgtgtacttcttttgcatcgcctacatgtacctcttgcccatttctaaattaggttcagcaatttgttgacaaatactg |
5282442 |
T |
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| Q |
213 |
cgcgatagagtagatgaact |
232 |
Q |
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|||||||||||||||||||| |
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| T |
5282443 |
cgcgatagagtagatgaact |
5282462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 11833688 - 11833621
Alignment:
| Q |
160 |
tgtacctcttgcccatttctaaattaggttcagcaatttgttgacaaatactgcgcgatagagtagat |
227 |
Q |
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||||||||||| |||||||||||||||| || |||||||| |||||||||||| |||||||||||| |
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| T |
11833688 |
tgtacctcttgttcatttctaaattaggtccaacaatttgtggacaaatactgcaggatagagtagat |
11833621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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