View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19583_low_62 (Length: 222)

Name: NF19583_low_62
Description: NF19583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19583_low_62
NF19583_low_62
[»] chr1 (1 HSPs)
chr1 (1-222)||(36314392-36314616)
[»] chr8 (18 HSPs)
chr8 (29-153)||(19345334-19345458)
chr8 (54-222)||(19355714-19355879)
chr8 (42-222)||(19410958-19411135)
chr8 (41-153)||(19337681-19337793)
chr8 (29-153)||(19503885-19504009)
chr8 (41-219)||(19555268-19555443)
chr8 (38-222)||(19404931-19405112)
chr8 (42-156)||(19457977-19458091)
chr8 (42-156)||(19522987-19523101)
chr8 (41-153)||(19468410-19468522)
chr8 (38-133)||(19376803-19376898)
chr8 (42-153)||(19592308-19592416)
chr8 (42-222)||(19469292-19469466)
chr8 (42-222)||(19540216-19540390)
chr8 (45-127)||(19172660-19172742)
chr8 (42-140)||(19287901-19287999)
chr8 (42-127)||(19390779-19390864)
chr8 (64-111)||(19371145-19371192)
[»] chr6 (1 HSPs)
chr6 (38-126)||(19543249-19543337)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36314616 - 36314392
Alignment:
Q  1 taacaagtggtgatgaagacaatgctagtggagaaagtggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatat 100  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314616 taacaagtggtgttgaagacaatgctagtggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatat 36314517  T
Q  101 accaacttgtagggaacctggtgaggtttttcagaaaaaggtgggaacacc---aagcaaaatggacaatgcatcatcatatgaatggaatgtaatttat 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  36314516 accaacttgtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaaaaagcaaaatggacaatgcatcatcatatgaatggaatgtaatttat 36314417  T
Q  198 ggttacagtgattgcaagatgagat 222  Q
    |||||||||||||||||||||||||    
T  36314416 ggttacagtgattgcaagatgagat 36314392  T

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Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 19345334 - 19345458
Alignment:
Q  29 tggagaaagtggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtt 128  Q
    |||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||    
T  19345334 tggagatattgggaatgcagatatgtgttatggatataatagcaatggagggtgccaaaaatgggaggaaataccaaattgtagggaaaatggtgaggtt 19345433  T
Q  129 tttcagaaaaaggtgggaacaccaa 153  Q
    |||||||||| ||||||||||||||    
T  19345434 tttcagaaaatggtgggaacaccaa 19345458  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 54 - 222
Target Start/End: Original strand, 19355714 - 19355879
Alignment:
Q  54 tgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaa 153  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  19355714 tgttatggatataatagcgatggagggtgccaaaaatgggaggaaataccaaattgtagggaacctggtgaggtttttcggaaaaaggtgggaagaccaa 19355813  T
Q  154 gcaaaatggacaatgcatcatcatatgaatggaatgtaatttatggttacagtgattgcaagatgagat 222  Q
      |||   ||||||||| || |   |||| |  |||| | ||||||||| |||||||||||||||||||    
T  19355814 ataaa---gacaatgcaacaactactgaaggtgatgtgaattatggttatagtgattgcaagatgagat 19355879  T

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Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 222
Target Start/End: Original strand, 19410958 - 19411135
Alignment:
Q  42 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 141  Q
    ||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  19410958 aatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgtttcagaaaaagg 19411057  T
Q  142 tgggaacaccaagcaaaatggacaatgcatcatcatatgaatggaatgtaatttatggttacagtgattgcaagatgagat 222  Q
     ||||| |||||||   || |||||| || || |||||||||   | || | |||| ||||||||||||||||||| ||||    
T  19411058 cgggaagaccaagc---atagacaattcaacaacatatgaattcgacgtgacttatagttacagtgattgcaagatcagat 19411135  T

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Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 19337681 - 19337793
Alignment:
Q  41 aaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaag 140  Q
    ||||||||| || |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |    
T  19337681 aaatgcagacatgtgttatggatataatagcgatggagggtgccaaaaatgggaggaaataccaaattgtagggaacctggtgaggtttttcggaaaatg 19337780  T
Q  141 gtgggaacaccaa 153  Q
    ||||||| |||||    
T  19337781 gtgggaagaccaa 19337793  T

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Target: chr8; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 19504009 - 19503885
Alignment:
Q  29 tggagaaagtggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtt 128  Q
    |||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||    
T  19504009 tggagagattgggaatgcagatatgtgttatggatataatagcaatggagggtgccaaaaatgggaggaaataccaaattgtagggaaaatggtgaggtt 19503910  T
Q  129 tttcagaaaaaggtgggaacaccaa 153  Q
    ||||||||||  | |||||||||||    
T  19503909 tttcagaaaattgcgggaacaccaa 19503885  T

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Target: chr8; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 41 - 219
Target Start/End: Complemental strand, 19555443 - 19555268
Alignment:
Q  41 aaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaag 140  Q
    |||||||||||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||    
T  19555443 aaatgcagatatgtgttatggatataatagtgatggaggatgccaaaaatgggaggatataccaacttgtagggcacctggtgaggggtttcagaaaaag 19555344  T
Q  141 gtgggaacaccaagcaaaatggacaatgcatcatcatatgaatggaatgtaatttatggttacagtgattgcaagatga 219  Q
    | ||||| ||||   || || |||||| || || | |||||||   |||| | |||| |||||||||||||||||||||    
T  19555343 gcgggaagacca---aacatagacaattcaacaacgtatgaattcgatgtgacttatagttacagtgattgcaagatga 19555268  T

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Target: chr8; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 38 - 222
Target Start/End: Original strand, 19404931 - 19405112
Alignment:
Q  38 tggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaa 137  Q
    ||||||||||||||| |||||||||||||||||  | |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||      
T  19404931 tggaaatgcagatatgtgttatggatataatagggacggagggtgccaaaagtgggaggatataccaacttgtagggaacctggtgaggtgtttcagagg 19405030  T
Q  138 aaggtgggaacaccaagcaaaatggacaatgcatcatcatatgaatggaatgtaatttatggttacagtgattgcaagatgagat 222  Q
    |||  ||||| ||||| ||  ||   |||||||||| |   |||| |  |||| | |||||||||||||||||||||||||||||    
T  19405031 aagacgggaagaccaaacatcat---caatgcatcaactactgaaggtgatgtgaattatggttacagtgattgcaagatgagat 19405112  T

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Target: chr8; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 42 - 156
Target Start/End: Original strand, 19457977 - 19458091
Alignment:
Q  42 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 141  Q
    ||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  19457977 aatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgtttcagaaaaagg 19458076  T
Q  142 tgggaacaccaagca 156  Q
     ||||| ||||||||    
T  19458077 cgggaagaccaagca 19458091  T

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Target: chr8; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 19523101 - 19522987
Alignment:
Q  42 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 141  Q
    ||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  19523101 aatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgtttcagaaaaagg 19523002  T
Q  142 tgggaacaccaagca 156  Q
     ||||| ||||||||    
T  19523001 cgggaagaccaagca 19522987  T

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Target: chr8; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 19468522 - 19468410
Alignment:
Q  41 aaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaag 140  Q
    |||||||||||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||    
T  19468522 aaatgcagatatgtgttatggatataatagtgatggaggatgccaaaaatgggaggatataccaacttgtagggcacctggtgaggggtttcagaaaaag 19468423  T
Q  141 gtgggaacaccaa 153  Q
    | ||||| |||||    
T  19468422 gcgggaagaccaa 19468410  T

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Target: chr8; HSP #11
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 19376803 - 19376898
Alignment:
Q  38 tggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttca 133  Q
    |||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||    
T  19376803 tggaaatgcagatatatgttatggatataatagtgatcgagggtgccaaaaatgggaggatataccagcttgcagggaacctggtgaggtgtttca 19376898  T

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Target: chr8; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 153
Target Start/End: Original strand, 19592308 - 19592416
Alignment:
Q  42 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 141  Q
    ||||||||||| ||||| ||||||| |    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19592308 aatgcagatatgtgttacggatatagtg---atggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtttttcagaaaaagg 19592404  T
Q  142 tgggaacaccaa 153  Q
     |||||||||||    
T  19592405 cgggaacaccaa 19592416  T

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Target: chr8; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 19469466 - 19469292
Alignment:
Q  42 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 141  Q
    ||||||||||| ||||| ||||||| |    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  19469466 aatgcagatatgtgttacggatatagtg---atggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtgtttcagaaaaagg 19469370  T
Q  142 tgggaacaccaagcaaaatggacaatgcatcatcatatgaatggaatgtaatttatggttacagtgattgcaagatgagat 222  Q
     ||||| |||||||   || |||||| || || | | ||||  | |||| | |||| ||||||||||||||||||||||||    
T  19469369 cgggaagaccaagc---attgacaattcaacaacgtttgaagaggatgtgacttatagttacagtgattgcaagatgagat 19469292  T

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Target: chr8; HSP #14
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 19540390 - 19540216
Alignment:
Q  42 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 141  Q
    ||||||||||| ||||| ||||||| |    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  19540390 aatgcagatatgtgttacggatatagtg---atggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtgtttcagaaaaagg 19540294  T
Q  142 tgggaacaccaagcaaaatggacaatgcatcatcatatgaatggaatgtaatttatggttacagtgattgcaagatgagat 222  Q
     ||||| |||||||   || |||||| || || | | ||||  | |||| | |||| ||||||||||||||||||||||||    
T  19540293 cgggaagaccaagc---attgacaattcaacaacgtttgaagaggatgtgacttatagttacagtgattgcaagatgagat 19540216  T

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Target: chr8; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 19172742 - 19172660
Alignment:
Q  45 gcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggt 127  Q
    |||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||||||| || |||||||| ||||||||    
T  19172742 gcagatatgtgttatggctataataccgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggt 19172660  T

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Target: chr8; HSP #16
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 42 - 140
Target Start/End: Original strand, 19287901 - 19287999
Alignment:
Q  42 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaag 140  Q
    ||||||||||  ||||||||||||||||   ||| |||||||||||||||||||||||| |||||||| ||||||| ||||||||| ||||| ||||||    
T  19287901 aatgcagataagtgttatggatataataatgatgaagggtgccaaaaatgggaggatatgccaacttgcagggaacgtggtgaggtctttcaaaaaaag 19287999  T

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Target: chr8; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 19390779 - 19390864
Alignment:
Q  42 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggt 127  Q
    ||||||||||  |||||||||||||||||  |||  |||||||||||||||||||||||||||||||| ||||| ||| |||||||    
T  19390779 aatgcagataagtgttatggatataatagtgatgccgggtgccaaaaatgggaggatataccaacttgcagggaccctcgtgaggt 19390864  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 19371145 - 19371192
Alignment:
Q  64 ataatagcaatggagggtgccaaaaatgggaggatataccaacttgta 111  Q
    ||||||| ||||| || ||||||||||||||| |||||||||||||||    
T  19371145 ataatagtaatggtggatgccaaaaatgggagtatataccaacttgta 19371192  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 126
Target Start/End: Original strand, 19543249 - 19543337
Alignment:
Q  38 tggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgagg 126  Q
    ||||||||||||  | |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19543249 tggaaatgcagacttgtgttatggatataatatcaacggagggtgccaaaaatgggaggatataccaagttgtagggaacctggtgagg 19543337  T

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